Job Description P0AG80 Confidence 100.00% Date Thu Jan 5 11:28:23 GMT 2012 Rank 42 Aligned Residues 414 % Identity 10% Template d1j1na_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.60

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.			.	.	.	.	.
Predicted Secondary structure																					.																																																						.	.
Query SS confidence																					.																																																						.	.
Query Sequence		N	A	Q	A	V	T	T	I	P	F	W	H	S	M	E	G	E	L	G	.	K	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	V	Y	E	V	G	.	.	T	A	T	M	M
Query Conservation																					.																																																						.	.
Alig confidence																					.														.																																								.	.
Template Conservation																																			.
Template Sequence		V	T	D	K	P	L	T	L	K	I	H	M	H	F	R	D	K	W	V	W	D	E	N	W	P	V	A	K	E	S	F	R	L	.	T	N	V	K	L	Q	S	V	A	N	K	A	A	T	N	S	Q	E	Q	F	N	L	M	M	A	S	G	D	L	P	D	V	V	G	G	D	N	L	K	D	K	F	I	Q	Y	G
Template Known Secondary structure		S		S	S											T	T	T					T	T	S										.		S							S		T	T													T	S	S				S					S	S
Template Predicted Secondary structure																																			.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																															.	.	.
Query SS confidence																																															.	.	.
Query Sequence		A	S	K	A	I	K	P	V	Y	D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	.	.	.	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A
Query Conservation																																															.	.	.
Alig confidence																																															.	.	.																							.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		Q	E	G	A	F	V	P	L	N	K	L	I	D	Q	Y	A	P	H	I	K	A	F	F	K	S	H	P	E	V	E	R	A	I	K	A	P	D	G	N	I	Y	F	I	P	Y	V	P	D	G	V	V	A	R	G	Y	F	I	R	E	D	W	L	K	K	L	N	L	K	P	P	.	.	.	Q	N	I	D	E	L	Y
Template Known Secondary structure			T	T	S	B																															T	T	S												S															T	T					.	.	.		B
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.	160	.
		174	.	.	.	.	.	180	.	.	.	.								.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.																																									.	.
Query SS confidence													.	.	.	.	.	.	.																																									.	.
Query Sequence		D	Y	A	A	K	L	K	A	S	G	M	.	.	.	.	.	.	.	K	C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	N	N	G	F	D	G	T	D	A	V	L	E	.	.	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G
Query Conservation													.	.	.	.	.	.	.																																									.	.
Alig confidence													.	.	.	.	.	.	.																																									.	.
Template Conservation
Template Sequence		T	V	L	K	A	F	K	E	K	D	P	N	G	N	G	K	A	D	E	V	P	F	I	D	R	H	P	D	E	V	F	R	L	V	N	F	W	G	A	R	S	S	G	S	D	N	Y	M	D	F	Y	I	D	N	G	R	V	K	H	P	W	A	E	T	A	F	R	D	G	M	K	H	V	A	Q	W	Y	K	E	G
Template Known Secondary structure										S		T	T		S	S	S									S	S	T	T					G	G	G	G	G	T			S		S	S	S	S	T	T						T	T					G	G	G	S																T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		245	.	.	.				.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure						.	.	.																																.	.	.																									.	.
Query SS confidence						.	.	.																																.	.	.																									.	.
Query Sequence		D	F	S	Y	.	.	.	V	G	R	K	D	E	S	T	E	K	F	Y	N	G	D	C	A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	.	.	.	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	N	A	.	.	I	I	G	G	A	S	L	W	V	M	Q	G	K
Query Conservation						.	.	.																																.	.	.																									.	.
Alig confidence						.	.	.																																.	.	.																									.	.
Template Conservation
Template Sequence		L	I	D	K	E	I	F	T	R	K	A	K	A	R	E	Q	M	F	G	G	N	L	G	G	F	T	H	D	W	F	A	S	T	M	T	F	N	E	G	L	A	K	T	V	P	G	F	K	L	I	P	I	A	P	P	T	N	S	K	G	Q	R	W	E	E	D	S	R	Q	K	V	R	P	D	G	W	A	I	T	V
Template Known Secondary structure			B		T	T	T	T	T		G	G	G								T	T														T					T	T	T	T	S	T	T										B		T	T	S				B						S	S		S						B	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340																															.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A	K	P	E	N	A	A	E	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Q	K	T	G	Y	L	P	I	T	K	A	A	Y	D	L	T	R	E	Q	G	F	Y	E	K	N
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	N	K	N	P	V	E	T	I	K	F	F	D	F	Y	F	S	R	P	G	R	D	I	S	N	F	G	V	P	G	V	T	Y	D	I	K	N	G	K	A	V	F	K	D	S	V	L	K	S	P	Q	P	V	N	N	Q	L	Y	D	M	G	A	Q	I	P	I	G	F	W	Q	D	Y	D	Y	E	R	Q	W	T	T
Template Known Secondary structure		T		S												T	T	S												B	T	T	T					T	T												S	S								T	T	T		S		S	S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.											.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.						.	.	.	.	.	430	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Query Sequence		P	G	A	D	T	A	T	R	Q	M	L	N	K	P	P	L	P	F	T	K	G	L	R	L	G	N	.	.	.	.	.	.	.	.	.	.	M	P	Q	I	R	V	I	V	D	E	E	L	E	S	V	W	T	G	K	K	T	P	Q	Q	A	L	D	T	A	V	E	R	.	.	.	.	.	G	N	Q	L	L	R	R
Query Conservation																												.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Template Conservation
Template Sequence		P	E	A	Q	A	G	I	D	M	Y	V	K	G	K	Y	V	M	P	G	F	E	G	V	N	M	T	R	E	E	R	A	I	Y	D	K	Y	W	A	D	V	R	T	Y	M	Y	E	M	G	Q	A	W	V	M	G	T	K	D	V	D	K	T	W	D	E	Y	Q	R	Q	L	K	L	R	G	L	Y	Q	V	L	Q	M
Template Known Secondary structure															T		B																																						T	S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		432	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	K	S	T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Q	Q	A	Y	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.	.	.