Job Description P0AG80 Confidence 100.00% Date Thu Jan 5 11:28:23 GMT 2012 Rank 27 Aligned Residues 374 % Identity 18% Template d1elja_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.85

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	V	T	T	I	P	F	W	H	S	M	E	G	E	L	G	K	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	V	Y	E	V	G	T	A	T	M	M	A	S	K	A	I
Query Conservation
Alig confidence																															.														.	.	.
Template Conservation																															.														.	.	.
Template Sequence		I	E	E	G	K	V	V	I	W	H	A	M	Q	P	N	E	L	E	V	F	Q	S	L	A	E	E	Y	M	A	.	L	P	E	V	E	I	V	F	E	Q	K	P	N	.	.	.	L	E	D	A	L	K	A	A	I	P	T	G	Q	G	P	D	L	F	I	W	A	H	D	W	I	G	K	F	A	E	A	G	L	L
Template Known Secondary structure																															.												T	T	.	.	.									T	T	T	T		S		S						G	G	G							T	T		B
Template Predicted Secondary structure																															.														.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	V	Y	D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A	D	Y	A	A	K	L	K	A
Query Conservation
Alig confidence												.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template Sequence		E	P	I	D	E	Y	V	T	E	D	.	.	.	.	.	.	L	L	N	E	F	A	P	M	A	Q	D	A	M	Q	Y	K	G	H	Y	Y	A	L	P	F	A	A	E	T	V	A	I	I	Y	N	K	E	M	V	S	.	.	.	.	.	.	.	E	P	P	K	T	F	D	E	M	K	A	I	M	E	K	Y	Y	D
Template Known Secondary structure					T	T	T					.	.	.	.	.	.			T	T	B								T			T	T																		T	T	T		S	.	.	.	.	.	.	.	S			S	S													B
Template Predicted Secondary structure												.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.							90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.								.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	M	K	C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	N	N	G	F	D	G	T	D	A	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G	D	F	S	Y	V	G	R	K	D	E	S	T	E	K	F	Y	N
Query Conservation
Alig confidence							.	.	.	.	.	.																																																										.
Template Conservation							.	.	.	.	.	.																																																										.
Template Sequence		P	A	N	E	K	.	.	.	.	.	.	Y	G	I	A	W	P	I	N	A	Y	F	I	S	A	I	A	Q	A	F	G	G	Y	Y	F	D	D	K	T	E	Q	P	G	L	D	K	P	E	T	I	E	G	F	K	F	F	F	T	E	I	W	P	Y	M	A	P	T	G	.	D	Y	N	T	Q	Q	S	I	F	L	E
Template Known Secondary structure		G	G	G	T	B	.	.	.	.	.	.		S		B				S									T	T	T	S			S			T	T	T	T				T	T	S														T	G	G	G	S		S			.											T
Template Predicted Secondary structure							.	.	.	.	.	.																																																										.
Template SS confidence
		147	.	.	150	.							.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		G	D	C	A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	N	A	I	I	G	G	A	S	L	W	V	M	Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A	K	P	E	N	A	A	E	.	W
Query Conservation																																																																																.
Alig confidence																					.																											.																																.
Template Conservation																					.																											.
Template Sequence		G	R	A	P	M	M	V	N	G	P	W	S	I	N	D	V	K	K	A	.	G	I	N	F	G	V	V	P	L	P	P	I	I	K	D	G	K	E	Y	W	P	R	P	Y	G	G	.	V	K	L	I	Y	F	A	A	G	I	K	N	K	D	A	A	W	K	F	A	K	W	L	T	T	S	E	E	S	I	K	T	L
Template Known Secondary structure		T	S	S	S						G	G	G							T	.	T														T	T											.							B	T	T		S
Template Predicted Secondary structure																					.																											.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.			.	.	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		H	Q	K	T	G	Y	L	P	I	T	K	A	A	Y	D	L	T	R	E	Q	G	F	Y	E	K	N	P	G	A	D	T	A	T	R	Q	M	L	N	K	P	P	L	P	F	T	K	G	L	R	L	G	N	M	P	Q	I	R	V	I	V	D	E	E	L	E	S	V	W	T	G	K	K	T	P	.	.	Q	Q	A	L
Query Conservation																																																																												.	.
Alig confidence																						.	.	.	.																				.	.	.	.	.																											.	.
Template Conservation																						.	.	.	.																				.	.	.	.	.
Template Sequence		A	L	E	L	G	Y	I	P	V	L	T	K	V	L	D	D	P	E	I	K	.	.	.	.	N	D	P	V	I	Y	G	F	G	Q	A	V	Q	H	A	Y	L	M	P	.	.	.	.	.	K	S	P	K	M	S	A	V	W	G	G	V	D	G	A	I	N	E	I	L	Q	D	P	Q	N	A	D	I	E	G	I	L
Template Known Secondary structure								B			B	G	G	G	G	G						.	.	.	.	T													T						.	.	.	.	.			T	T																	T	S	T	T	T
Template Predicted Secondary structure																						.	.	.	.																				.	.	.	.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.					.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.						.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		419	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	A	V	E	R	G	N	Q	L	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	Y	Q	Q	E	I	L	N	N	M	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions