Job Description P0AG80 Confidence 100.00% Date Thu Jan 5 11:28:23 GMT 2012 Rank 2 Aligned Residues 390 % Identity 18% Template c3uorB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:abc transporter sugar binding protein; PDBTitle: the structure of the sugar-binding protein male from the phytopathogen2 xanthomonas citri Resolution 2.20 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	I	P	F	W	H	S	M	E	G	E	L	G	K	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	V	Y	E	V	G	T	A	T	M	M	A	S	K	A	I	K	P	V
Query Conservation
Alig confidence									.	.																															.
Template Conservation									.	.																															.
Template Sequence		T	T	V	R	F	W	A	.	.	M	G	K	E	A	E	V	V	A	E	L	V	A	D	F	E	K	Q	N	P	T	I	H	V	D	V	Q	N	I	P	.	M	T	A	A	H	E	K	L	L	T	A	F	A	A	D	G	L	P	D	V	C	Q	L	G	N	T	W	L	P	E	F	A	L	L	D	T	L	E	P	M
Template Known Secondary structure									.	.		T														T	T	T	S	T	T										.	T	T	T	T	T									T	T				S						G	G	G							T	T		B
Template Predicted Secondary structure									.	.																															.
Template SS confidence
		28	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A	D	Y	A	A	K	L	K	A	S	G	M
Query Conservation
Alig confidence															.	.	.																																												.	.
Template Conservation															.	.	.																																												.	.
Template Sequence		Q	P	Y	V	A	R	S	K	I	V	D	P	A	.	.	.	D	Y	F	P	G	V	W	D	T	N	L	V	D	G	T	L	Y	G	V	P	W	Y	V	D	T	R	L	L	F	Y	R	K	D	L	L	R	E	A	G	Y	S	Q	M	.	.	P	K	T	W	A	E	M	E	Q	V	M	A	A	I	K	R	K	V	G
Template Known Secondary structure									S	S			G	G	.	.	.	G	B							T	T			T	T																								T	T		S	S		.	.			B
Template Predicted Secondary structure															.	.	.																																												.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		K	C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	N	N	G	F	D	G	T	D	A	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G	D	F	S	Y	.	.	V	G	R	K	D	E	S	T	E	K	F	Y	N	G
Query Conservation																																																																		.	.
Alig confidence																								.	.	.	.																																							.	.
Template Conservation																								.	.	.	.
Template Sequence		P	D	R	Y	A	I	L	M	P	L	N	E	F	E	Q	Q	L	S	F	A	L	Q	.	.	.	.	Q	D	D	R	L	L	R	D	H	D	N	Y	G	N	F	R	G	A	G	F	R	K	A	L	G	F	Y	D	N	M	Y	Q	Q	G	W	A	P	K	V	S	E	T	Q	V	S	N	V	W	Y	E	F	F	N	G
Template Known Secondary structure		T	T	S							T	T											T	.	.	.	.	S	S	S		S			T	T	T	T				T	T	S																T	T	S	S		S			G	G	G		S								T	T
Template Predicted Secondary structure																								.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	C	A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	N	A	I	I	G	G	A	S	L	W	V	M	Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A	K	P	E	N	A	A	E	W	H	Q
Query Conservation
Alig confidence																																																							.	.
Template Conservation																																																							.	.
Template Sequence		Y	Y	A	F	Y	L	S	G	P	W	N	V	R	E	F	K	L	R	Q	P	P	G	M	E	G	N	W	G	T	A	P	L	P	G	P	N	G	L	G	A	G	I	A	G	G	S	S	L	V	I	F	K	S	.	.	S	Q	H	K	D	A	S	W	K	L	I	E	Y	L	S	Q	P	Q	V	Q	A	R	F	H	A
Template Known Secondary structure		S								T												G	G	G	T	T	S								B	T	T	S	S													B	T	T	.	.		S													T	S
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	G	Y	L	P	I	T	K	A	A	Y	D	L	T	R	E	Q	G	F	Y	E	K	N	P	G	A	D	T	A	T	R	Q	M	L	N	K	P	P	L	P	F	T	K	G	L	R	L	G	N	M	P	Q	I	R	V	I	V	D	E	E	L	E	S	V	W	T	G	K	K	T	P	Q	Q	A	L	D	T	A	V
Query Conservation
Alig confidence																				.	.	.	.																							.	.	.	.	.
Template Conservation																				.	.	.	.																							.	.	.	.	.
Template Sequence		I	I	G	D	L	P	P	R	R	S	T	W	K	L	P	S	L	A	.	.	.	.	N	D	A	L	A	H	A	F	G	D	Q	L	E	R	V	K	A	T	P	K	V	L	.	.	.	.	.	E	W	E	R	I	V	Q	E	M	R	L	V	T	E	R	V	V	R	G	G	Q	S	H	D	A	A	V	Q	E	L	D
Template Known Secondary structure						B		S	B						S					.	.	.	.	T		T	T	T							T	T	T								T	.	.	.	.	.	T
Template Predicted Secondary structure																				.	.	.	.																							.	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.					.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.						.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	G	N	Q	L	L	R	R	F	E	K	S	T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	R	V	D	E	I	L	A	K	R	R	W	I	F	E
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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