Job Description P0AG80 Confidence 99.98% Date Thu Jan 5 11:28:23 GMT 2012 Rank 52 Aligned Residues 296 % Identity 14% Template c3rpwA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter; PDBTitle: the crystal structure of an abc transporter from rhodopseudomonas2 palustris cga009 Resolution 1.65 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																				.																																								.
Query SS confidence																				.																																								.
Query Sequence		T	I	P	F	W	H	S	M	E	G	E	L	G	K	E	V	D	S	.	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	.	A	I	L	Q	V	Y	E	V	G	T	A	T	M	M	A	S	K	A	I	K	P
Query Conservation																				.																																								.
Alig confidence								.												.										.														.	.	.														.							.
Template Conservation								.																						.														.	.	.																					.
Template Sequence		V	V	I	X	Q	D	.	P	G	G	G	Y	G	D	A	L	R	K	V	X	Y	D	P	F	E	K	E	T	.	G	I	K	V	V	T	V	Q	E	A	R	S	G	.	.	.	P	R	I	K	A	Q	A	E	A	G	K	A	Q	W	D	L	T	F	I	F	.	D	Q	E	T	K	L	L	G	D	C	C	L	A	D
Template Known Secondary structure								.													T									.	S									S				.	.	.										T					S	B					.							T					B
Template Predicted Secondary structure								.																						.														.	.	.																					.
Template SS confidence
		31	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A	D	Y	A	A	K	L	K	A	S	G
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.																																									.	.	.	.	.													.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.																																									.	.	.	.	.													.	.	.	.	.	.
Template Sequence		I	D	Y	S	K	L	S	E	.	.	.	.	.	.	.	.	.	S	A	H	K	T	L	A	A	X	P	D	N	L	K	R	K	K	G	V	A	L	Q	V	I	G	V	G	L	V	Y	N	K	D	K	F	K	G	D	K	A	.	.	.	.	.	P	Q	T	W	A	D	F	W	D	V	K	K	.	.	.	.	.	.
Template Known Secondary structure				G	G	G	S			.	.	.	.	.	.	.	.	.								T	S		G	G	G			T	T															T	T	T	S		T	T	S	S	.	.	.	.	.			S							T	T	T	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.																																									.	.	.	.	.													.	.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.										.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.						.	.	.	.	.	.	.	160	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	N	N	G	F	D	G	T	D	A	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G	D	F	S	Y	V	G	R	K	D	E	S	T	E	K	F	Y	N	G	D
Query Conservation
Alig confidence		.																													.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation		.																													.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Sequence		.	F	P	G	R	R	C	X	P	A	W	P	R	F	T	F	E	A	A	L	X	A	D	G	V	T	K	D	K	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	P	I	D	X	D	R	A	L	K	K	L	K	E	I	K	P	H	V	V	K	W	W	.	T	T	A	A	Q	P	P	Q	L	I	L	D	G	E
Template Known Secondary structure		.	S		S						S	S	S	T	T									T	T			T	T	S	.	.	.	.	.	.	.	.	.	.	.	.			S														G	G	G						.		S	T	T								T	T	S
Template Predicted Secondary structure		.																													.	.	.	.	.	.	.	.	.	.	.	.																									.
Template SS confidence
			165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.													.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	N	A	I	I	G	G	A	S	L	W	V	M	Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A	K	P	E	N	A	A	E	W	H	Q	K
Query Conservation
Alig confidence																					.									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	X	C	L	A	Y	T	G	S	X	S	K	L	A	L	E	G	A	.	P	I	D	L	T	F	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	V	Y	Y	D	F	F	S	I	P	K	G	A	P	N	Y	D	N	A	L	K	L	L	S	W	R	L	D	P	K	R	A	A	Q	L	T	S	T
Template Known Secondary structure			S																T		.	S								.	.	.	.	.	.	.	.	.	.	.	.	.											B	T	T		T	T												T
Template Predicted Secondary structure																					.									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.														.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	Y	L	P	I	T	K	A	A	Y	D	L	T	R	E	Q	G	F	Y	E	K	N	P	G	A	D	T	A	T	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	P	V	A	L	P	S	K	V	V	F	D	A	A	T	D	K	N	I	A	R	Y	W	A	N	N	P	E	N	V	A	K
Template Known Secondary structure		S			B		S									S		G	G	G	G	G	G	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions