Job Description P0AG80 Confidence 100.00% Date Thu Jan 5 11:28:23 GMT 2012 Rank 50 Aligned Residues 292 % Identity 11% Template c3pu5A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein; PDBTitle: the crystal structure of a putative extracellular solute-binding2 protein from bordetella parapertussis Resolution 2.05 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	T	T	I	P	F	W	H	S	M	E	G	E	L	G	K	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	V	Y	E	V	G	T	A	T	M	M	A	S	K	A	I	K
Query Conservation
Alig confidence																																.											.												.
Template Conservation																																.											.												.
Template Sequence		A	D	D	H	I	Y	V	T	S	S	G	G	S	F	L	E	N	V	R	K	H	X	A	E	P	F	E	K	Q	S	.	G	V	K	V	T	L	V	P	G	T	.	N	P	A	H	A	L	K	I	L	S	S	.	R	G	T	P	P	Y	D	V	A	A	F	G	G	N	D	X	Y	R	L	I	R	A	K	K	L	A
Template Known Secondary structure		T	T																				T									.											.												.		S	S		S		S															T	T		B
Template Predicted Secondary structure																																.											.												.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	Y	D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A	D	Y	A	A	K	L	K	A	S
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template Sequence		Q	V	D	E	K	S	V	P	S	L	A	D	V	P	E	K	.	.	.	.	.	.	.	.	.	.	.	F	K	A	D	W	E	G	C	G	S	L	Y	D	Y	S	S	V	G	I	A	Y	R	P	D	K	I	Q	G	G	V	.	.	.	.	.	.	.	K	S	W	K	E	F	V	E	R	T	V	A	G	E	F	G
Template Known Secondary structure					T	T	T		G	G	G	G	G	S		G	G	.	.	.	.	.	.	.	.	.	.	.	G	T	G	G	G	T	T	S						B									T	T	T	S	T	T			.	.	.	.	.	.	.	S	S											T	T	T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.												.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.								.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	K	C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	N	N	G	F	D	G	T	D	A	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G	D	F	S	Y	V	G	R	K	D	E	S	T	E	K	F	Y	N	G
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Sequence		K	Q	V	F	F	N	N	L	S	S	N	V	R	G	A	E	V	L	S	X	F	G	K	I	Y	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	G	D	I	E	A	S	I	A	T	L	E	R	X	K	P	H	I	F	K	F	F	.	T	A	F	N	D	P	V	V	L	L	T	S	G
Template Known Secondary structure		T							G	G	G	T	S	S													S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T													G	G	G						.		S	T	T									T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.																	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	C	A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	N	A	I	I	G	G	A	S	L	W	V	M	Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A	K	P	E	N	A	A	E	W	H	Q
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.																	.	.
Template Sequence		E	G	A	I	G	P	G	W	D	G	R	T	F	I	A	E	D	S	T	K	G	X	V	K	W	V	D	.	.	.	.	.	.	.	.	.	.	P	T	E	G	A	V	S	S	G	P	V	X	A	V	V	K	.	.	G	G	K	E	D	L	A	K	A	F	X	N	Y	A	L	G	E	E	A	Q	K	A	F	C	E
Template Known Secondary structure		S		S																T	T	T	S	S					.	.	.	.	.	.	.	.	.	.		T	T												B	T	.	.	T	S													T	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.																	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.											260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	G	Y	L	P	I	T	K	A	A	Y	D	L	T	R	E	Q	G	F	Y	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	X	Y	Y	G	A	V	N	R	K	V	Q	Y	S	E	K	L	K	H	R	L	P
Template Known Secondary structure				T		B		S		T	T					T	T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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