Job Description P0AG80 Confidence 100.00% Date Thu Jan 5 11:28:23 GMT 2012 Rank 31 Aligned Residues 386 % Identity 13% Template c3oo6A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:abc transporter binding protein acbh; PDBTitle: crystal structures and biochemical characterization of the bacterial2 solute receptor acbh reveal an unprecedented exclusive substrate3 preference for b-d-galactopyranose Resolution 2.15 Å

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		23	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		A	V	T	T	I	P	F	W	H	S	.	M	E	G	E	L	G	K	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	V	Y	E	V	G	T	A	T	M	M	A	S	K	A	I
Query Conservation												.
Alig confidence												.																			.													.
Template Conservation																															.													.
Template Sequence		G	N	G	P	I	T	F	G	S	N	Y	S	D	E	A	P	K	A	A	F	A	S	L	M	Q	Q	A	T	T	.	S	T	T	V	P	V	T	V	N	T	T	D	.	H	N	T	F	Q	N	N	I	S	N	Y	L	Q	G	T	P	D	S	L	A	T	W	F	A	G	Y	R	L	Q	F	F	A	A	Q	G	L	L
Template Known Secondary structure				S										S																	.													.							T							S				S							T								T	T	T		B
Template Predicted Secondary structure																															.													.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	V	Y	D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A	D	Y	A	A	K	L	K	A
Query Conservation
Alig confidence															.	.	.	.	.	.																																												.	.	.
Template Conservation															.	.	.	.	.	.																																												.	.	.
Template Sequence		T	P	I	D	D	V	W	D	K	I	G	G	T	.	.	.	.	.	.	F	N	D	A	A	K	S	L	S	K	G	L	D	G	H	Y	Y	L	V	P	L	Y	N	Y	P	W	V	V	F	Y	N	K	S	V	F	Q	S	K	G	Y	E	V	P	.	.	.	A	S	W	E	A	F	I	A	L	A	R	K	M	Q	S
Template Known Secondary structure												G	G	G	.	.	.	.	.	.	S							T	T	B		T	T	S		B																							T					.	.	.		B
Template Predicted Secondary structure															.	.	.	.	.	.																																												.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.							.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		S	G	M	K	C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	N	N	G	F	D	G	T	D	A	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G	D	F	S	Y	.	V	G	R	K	D	E	S	T	E	K	F	Y
Query Conservation																																																																					.
Alig confidence							.																																																														.
Template Conservation							.
Template Sequence		D	G	L	V	P	.	L	A	F	A	D	K	D	G	W	P	A	L	G	T	F	D	I	L	N	L	R	I	N	G	Y	D	Y	H	I	K	L	M	K	H	E	V	P	W	T	D	P	G	V	T	K	V	F	D	Q	W	R	E	L	A	A	Y	Q	Q	K	G	A	N	G	R	T	W	Q	D	A	A	K	A	L	E
Template Known Secondary structure		T	T	S			.						T	T	S	S	T	T												T										T	T	S	S		T	T	S															T	T	B		S	S	G	G	G
Template Predicted Secondary structure							.
Template SS confidence
		164	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	D	C	A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	N	A	I	I	G	G	A	S	L	W	V	M	Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A	K	P	E	N	A	A	E	W
Query Conservation
Alig confidence																						.																								.
Template Conservation																						.																								.
Template Sequence		N	K	Q	A	G	M	M	F	Q	G	S	N	Q	V	A	A	N	Y	S	A	.	K	N	L	P	D	L	D	F	F	V	F	P	A	I	N	P	Q	Y	G	T	D	Y	M	.	D	A	P	T	D	G	F	I	L	P	K	K	G	K	N	A	A	A	A	K	K	V	L	Q	Y	I	G	T	A	E	A	E	A	A	F
Template Known Secondary structure		T	T	S															S		T	.	T	T	G	G	G								B			T	T	T	T	T				.										B	T	T		S													T	S
Template Predicted Secondary structure																						.																								.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.			.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		H	Q	K	T	G	Y	L	P	I	T	K	A	A	Y	D	L	T	R	E	Q	G	F	Y	E	K	N	P	G	A	D	T	A	T	R	Q	M	L	N	K	P	P	L	P	F	T	K	G	L	R	L	G	N	M	P	Q	I	R	V	I	V	D	E	E	L	E	S	V	W	T	G	K	K	.	.	T	P	Q	Q	A	L
Query Conservation																																																																										.	.
Alig confidence																					.	.	.	.	.	.																	.	.																														.	.
Template Conservation																					.	.	.	.	.	.																	.	.
Template Sequence		L	K	T	D	H	W	D	V	G	L	A	N	G	L	I	A	P	T	Y	.	.	.	.	.	.	N	D	I	Q	K	K	S	V	A	E	I	G	K	C	K	S	.	.	V	S	Q	F	M	D	R	D	T	V	P	D	M	A	N	A	M	I	K	L	I	Q	Q	F	I	D	Q	P	T	P	E	T	I	A	T	V	Q
Template Known Secondary structure			T	T			S	S					T	T				T	T		.	.	.	.	.	.														S	S		.	.									S																				S
Template Predicted Secondary structure																					.	.	.	.	.	.																	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.							340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		419	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	A	V	E	R	G	N	Q	L	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	S	A	E	D	Q	A	K	T	I	F	R
Template Known Secondary structure												T
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions