Job Description P0AG80 Confidence 99.86% Date Thu Jan 5 11:28:23 GMT 2012 Rank 67 Aligned Residues 286 % Identity 11% Template c3cg1A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein pf0080; PDBTitle: crystal structure of p. furiosus periplasmic binding protein2 moda/wtpa with bound tungstate Resolution 1.60 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.																																			.
Query SS confidence																																.	.	.																																			.
Query Sequence		V	T	T	I	P	F	W	H	S	M	E	G	E	L	G	K	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	.	.	.	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	V	.	Y	E	V	G	T	A	T	M	M	A	S	K
Query Conservation																																.	.	.																																			.
Alig confidence											.	.																				.	.	.												.	.																						.
Template Conservation											.	.																																		.	.
Template Sequence		E	V	T	L	I	V	F	H	A	.	.	G	S	L	S	V	P	F	Q	E	V	E	K	E	F	S	E	Y	A	E	R	N	L	G	I	K	V	S	F	Q	D	E	A	S	.	.	G	S	V	M	A	V	R	K	V	T	D	L	G	R	K	A	D	V	I	G	V	A	D	Y	T	L	I	P	Q	L	L	I	P	N
Template Known Secondary structure											.	.	G	G	G																				S											.	.											T	S					S					S	S	T	T						T	T	T	T
Template Predicted Secondary structure											.	.																																		.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	K	P	V	Y	D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A	D	Y	A	A	K	L
Query Conservation
Alig confidence																													.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	T	D	F	Y	V	L	F	A	T	N	E	I	V	I	A	F	T	D	K	S	R	Y	V	E	E	M	.	.	.	.	.	K	S	N	P	D	K	W	Y	E	I	L	A	R	E	D	V	R	F	G	F	S	D	.	.	.	.	.	.	.	.	.	.	.	.	P	N	Q	D	P	C	G	Y	R	S	L	M	V	I
Template Known Secondary structure		T		S																T	T	S	T	T					.	.	.	.	.				G	G	G						T	S	T	T								.	.	.	.	.	.	.	.	.	.	.	.	T	T	T
Template Predicted Secondary structure																													.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.						.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.													.	.	.	160	.	.	.	.	.	.	.	.	.	170
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	S	G	M	K	C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	N	N	G	F	D	G	T	D	A	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G	D	F	S	Y	V	G	R	K	D	E	S	T	E	K	F
Query Conservation
Alig confidence																																																											.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.
Template Sequence		K	L	A	D	L	Y	Y	G	K	E	I	F	K	E	L	I	E	E	N	T	N	I	Y	S	N	G	T	Q	I	Y	A	P	K	E	I	T	V	N	P	G	K	I	V	I	R	P	K	E	T	D	L	L	G	L	V	E	S	.	.	.	.	.	.	.	.	.	G	S	I	D	Y	I	F	I	Y	K	S	V	A	K
Template Known Secondary structure									T	S							T	T	T	T	B	S					T	T						S	S			B		T	T	T					S	S	G	G	G	G							.	.	.	.	.	.	.	.	.	T	S	S	S
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.										.	.	230	.	.	.	.	.	.	.	.	.	240	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	N	G	D	C	A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	N	A	I	I	G	G	A	S	L	W	V	M	Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A	K	P	E	N	A	A	E
Query Conservation
Alig confidence																																												.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.
Template Sequence		Q	H	N	L	S	Y	I	T	L	P	S	E	I	N	L	G	D	F	S	K	E	K	F	Y	G	Q	I	S	I	T	L	G	S	T	G	K	T	I	K	A	K	P	.	.	.	.	.	.	I	V	Y	G	V	T	V	L	K	D	A	P	N	R	E	V	A	I	E	F	L	R	Y	L	L	S	E	N	G	K	R	I
Template Known Secondary structure			T	T								T	T	T	S	S			G	G	G					T	T						T	T	T									.	.	.	.	.	.									T	T		T	T													S
Template Predicted Secondary structure																																												.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.							.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	H	Q	K	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	E	K	N	H	Q
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions