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Job DescriptionP0AG80
Confidence99.92%DateThu Jan 5 11:28:23 GMT 2012
Rank65Aligned Residues288
% Identity12%Templatec3cfzA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:upf0100 protein mj1186; PDBTitle: crystal structure of m. jannaschii periplasmic binding2 protein moda/wtpa with bound tungstate
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60.........70.........80....... ..90.........100..
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Query Sequence  VTTIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGNAPAILQV. YEVGTATMMASKAIK
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Template Sequence  KIVLKIFH. . AGSLSVPFEEYEKMFEKEHPNVDVEREPAG. SVACVRKI. . . IDLGKKADILASADYSLIPQMMMPKYAD
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..GGG
TT
....TS



SSSTTTTTTT
S
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   37..40.... .....50.........60.........70.... .....80.. .......90.........100.........110
 
   103......110.........120.........130.........140.........150.........160.........170.........180..
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Query Sequence  PVYDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLKAS
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Template Sequence  WYVMFARNEIVLAYTDKSK. . . . . YKDEINSTNWYKILQRPDVKIGFSNPN. . . . . . . DDPCGYRTQMVLQLAELYYKDP
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TTST.....TTTT

TTTTTSTT


TT.......T
T
T
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   111........120......... 130.........140.........150...... ...160.........170........
 
   183......190.........200.........210.........220.........230.........240.........250.........260..
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Query Sequence  GMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEMNKKGDFSYVGRKDESTEKFYNG
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Template Sequence  TIYDNLVLKHSNIKVEEN. . . . . NGTYLILVPKELDVDTNKLFVRSKETDLLAPLEA. . . . . . GAFDYLFIYKSVANQHH
Template Known Secondary structure  TTGGGBS
.....TT
SS

B
TTTSSGGGGT......TSSSTT
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   179180.........190...... ...200.........210.........220.........230 .........240.......
 
   263......270.........280.........290.........300.........310.........320.........330.........340..
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Query Sequence  DCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQ
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Template Sequence  LKYIELPKEINLGYYEYADTYKKVALKIIAKNKTINAKP. . . . . . IVYGMTVPTNAPHKKEAIEFVKFVLGHP. . . EVLE
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TTTSS

GGGTTGGGT


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TT
TT
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   248.250.........260.........270.........280...... ...290.........300.........310.... ....
 
   343......
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Query Sequence  KTGYLPI
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Template Conservation    
  

Template Sequence  NNGQPAI
Template Known Secondary structure  TTT

B
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   319320.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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