Job Description P0AG80 Confidence 100.00% Date Thu Jan 5 11:28:23 GMT 2012 Rank 9 Aligned Residues 380 % Identity 15% Template c2zykA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:solute-binding protein; PDBTitle: crystal structure of cyclo/maltodextrin-binding protein2 complexed with gamma-cyclodextrin Resolution 2.50 Å

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		23	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		A	V	T	T	I	P	F	W	H	S	M	E	.	G	E	L	G	K	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	V	Y	E	V	G	T	A	T	M	M	A	S	K	A	I
Query Conservation														.
Alig confidence														.																	.													.
Template Conservation																															.													.
Template Sequence		K	P	D	K	L	V	V	W	E	N	A	D	D	G	V	Q	L	N	N	T	K	K	W	A	G	E	F	T	K	.	K	T	G	I	Q	V	E	V	V	P	V	A	.	L	L	K	Q	Q	E	K	L	T	L	D	G	P	A	G	K	G	A	D	L	V	T	W	P	H	D	R	L	G	E	A	V	T	K	G	L	L
Template Known Secondary structure														S	S																.													.	T	T	T									G	G	G	T		S		S						G	G	G	T	T					T	T
Template Predicted Secondary structure																															.													.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	V	Y	D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A	D	Y	A	A	K	L	K	A
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Sequence		Q	P	I	Q	V	D	N	S	V	K	N	.	.	.	.	.	.	.	.	Q	F	D	D	V	A	M	K	A	L	T	Y	G	G	K	L	Y	G	L	P	K	A	I	E	S	V	A	L	I	Y	N	K	K	L	M	.	.	.	.	.	.	.	G	Q	V	P	A	T	Y	D	E	L	F	Q	Y	A	K	A	N	N	K
Template Known Secondary structure													.	.	.	.	.	.	.	.	T	B								T			T	T																		T	T	T		.	.	.	.	.	.	.	S	S			S	B													B
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.									.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140								.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	M	K	C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	N	N	G	F	D	G	T	D	A	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G	D	F	S	Y	V	G	R	K	D	E	S	T	E	K	F	Y	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	D	E	Q	K	Y	G	V	L	F	E	A	N	N	F	Y	Y	T	Y	F	L	F	A	A	K	G	A	A	V	F	K	E	Q	D	G	T	L	D	P	N	E	I	G	L	N	S	P	E	A	V	Q	G	M	N	E	V	Q	K	W	F	T	E	A	R	L	P	Q	S	L	K	A	D	T	V	N	G	L	F	K	S
Template Known Secondary structure		T	T	T	T	B							T	T										T	T	T	T			S				S	S	S	S								T	T	S																T	S				T	T												T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	C	A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	N	A	I	I	G	G	A	S	L	W	V	M	Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A	K	P	E	N	A	A	E	W	H
Query Conservation
Alig confidence																								.	.	.	.																													.	.
Template Conservation																								.	.	.	.																													.	.
Template Sequence		G	K	V	A	A	V	I	N	G	P	W	A	I	K	D	Y	Q	A	A	G	I	N	.	.	.	.	V	G	V	A	P	L	P	K	I	D	G	K	D	A	Q	T	F	I	G	V	K	G	W	Y	L	S	A	Y	.	.	S	K	Y	P	K	Y	A	T	E	L	M	Q	F	L	T	S	K	E	A	L	A	S	R	F
Template Known Secondary structure		T									G	G	G							T	T			.	.	.	.								B	S	S	S	S															T	T	.	.		S														S
Template Predicted Secondary structure																								.	.	.	.																													.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.					.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	T	G	Y	L	P	I	T	K	A	A	Y	D	L	T	R	E	Q	G	F	Y	E	K	N	P	G	A	D	T	A	T	R	Q	M	L	N	K	P	P	L	P	F	T	K	G	L	R	L	G	N	M	P	Q	I	R	V	I	V	D	E	E	L	E	S	V	W	T	G	K	K	T	P	Q	Q	A	L	D	T	A
Query Conservation
Alig confidence																					.	.	.	.																							.	.	.	.	.
Template Conservation																					.	.	.	.																							.	.	.	.	.
Template Sequence		K	E	T	G	E	I	P	P	Q	K	E	L	L	N	D	P	M	I	K	.	.	.	.	N	N	P	V	V	N	G	F	A	K	Q	A	S	K	G	V	P	M	P	S	I	P	.	.	.	.	.	E	M	G	V	V	W	E	P	I	N	N	A	H	T	F	V	A	Q	G	K	Q	T	P	E	Q	A	L	N	D	A
Template Known Secondary structure										B											.	.	.	.	S												T	T							S	G	.	.	.	.	.	G	G																T	T	S	S
Template Predicted Secondary structure																					.	.	.	.																							.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.					.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.						.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		422	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	R	G	N	Q	L	L	R	R	F	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	I	M	K	E	K	I	Q	T	M	K	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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