Job Description P0AG80 Confidence 100.00% Date Thu Jan 5 11:28:23 GMT 2012 Rank 13 Aligned Residues 380 % Identity 13% Template c2w7yA_ PDB info PDB header:sugar-binding protein Chain: A: PDB Molecule:probable sugar abc transporter, sugar-binding PDBTitle: structure of a streptococcus pneumoniae solute-binding2 protein in complex with the blood group a-trisaccharide. Resolution 2.35 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.						40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																																																								.
Query SS confidence																.	.	.	.	.																																																								.
Query Sequence		T	I	P	F	W	H	S	M	E	G	E	L	G	K	.	.	.	.	.	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	V	Y	E	V	G	T	A	T	.	M	M	A	S	K
Query Conservation																.	.	.	.	.																																																								.
Alig confidence																.	.	.	.	.																										.	.																													.
Template Conservation																																														.	.
Template Sequence		V	L	E	F	Y	H	G	Y	H	H	S	E	D	E	W	P	V	A	K	T	X	R	D	L	Y	D	K	F	A	E	E	H	S	G	V	E	F	K	P	T	P	V	N	G	.	.	D	L	K	D	I	X	N	N	K	V	A	S	G	E	F	P	D	V	I	D	L	A	G	N	A	V	S	L	A	A	I	E	Q	K
Template Known Secondary structure								S					T	T	T																					S								S	S	.	.											T	T	T				S					T	T										T	T
Template Predicted Secondary structure																																														.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	K	P	V	Y	D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A	D	Y	A	A	K	L
Query Conservation
Alig confidence																	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.
Template Sequence		L	V	L	D	L	K	P	Y	I	D	S	N	K	L	E	.	.	.	.	.	.	K	N	V	G	L	N	Y	K	Q	N	Q	K	D	G	K	I	Y	T	V	H	E	Q	L	F	T	X	G	L	W	Y	N	K	D	I	F	A	K	A	G	A	K	T	P	D	Q	W	N	T	W	D	D	F	T	Q	A	X	A	S	I
Template Known Secondary structure			B										T	T			.	.	.	.	.	.				T	T					T			T	T					B		S	B																	T				G	G	G			S
Template Predicted Secondary structure																	.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.							.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		K	A	S	G	M	K	C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	N	N	G	F	D	G	T	D	A	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G	D	F	S	Y	.	V	G	R	K	D	E	S	T	E	K
Query Conservation																																																																							.
Alig confidence															.	.	.	.																																																					.
Template Conservation															.	.	.	.
Template Sequence		R	K	Q	D	G	V	Y	A	F	G	A	G	E	.	.	.	.	P	S	I	R	L	F	N	T	V	L	G	T	T	E	N	G	R	K	L	L	D	K	P	L	T	K	E	G	I	E	S	K	E	F	A	D	A	L	K	X	V	X	K	E	I	Q	A	N	G	S	K	N	A	G	G	D	A	N	A	Y	S	K	D
Template Known Secondary structure			T	S	S	S							B	T	.	.	.	.	T										T	T	S							T	T	S				T	T	T	T	T	S																	T		G	G	G		S	B
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.					.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Y	N	G	D	C	A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	N	A	I	I	G	G	A	S	L	W	V	M	Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A	K	P	E	N	A	A
Query Conservation
Alig confidence																							.	.	.	.											.	.	.	.	.
Template Conservation																							.	.	.	.											.	.	.	.	.
Template Sequence		F	Q	E	G	K	S	A	V	F	F	N	G	V	W	A	S	G	E	X	S	K	.	.	.	.	N	P	S	L	A	P	G	I	Y	P	.	.	.	.	.	A	G	V	A	I	S	S	S	G	G	G	I	T	I	S	S	K	X	S	E	A	K	Q	K	L	A	L	E	F	L	K	Y	X	T	S	D	D	V	Q	K
Template Known Secondary structure				T	T	S								G	G	G					T	T	.	.	.	.	S	T	T						B	G	.	.	.	.	.	G	G													B	S	S	S																T	S
Template Predicted Secondary structure																							.	.	.	.											.	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.					.	.	290	.	.	.	.	.	.	.						.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		E	W	H	Q	K	T	G	Y	L	P	I	T	K	A	A	Y	D	L	T	R	E	Q	G	F	Y	E	K	N	P	G	A	D	T	A	T	R	Q	M	L	N	K	P	P	L	P	F	T	K	G	L	R	L	G	N	M	.	P	Q	I	R	V	I	V	D	E	E	L	E	S	V	W	T	G	K	K	T	P	Q	Q	A
Query Conservation																																																									.
Alig confidence																								.	.																																.
Template Conservation																								.	.
Template Sequence		V	I	F	E	K	V	G	A	N	P	S	N	E	N	V	N	V	K	E	L	S	E	.	.	K	S	S	E	A	T	T	K	I	L	G	Q	A	I	T	Q	V	K	N	A	K	A	V	V	P	T	V	S	D	V	W	G	G	D	V	H	T	A	I	I	N	A	L	T	E	S	A	A	E	N	V	D	V	D	Q	K
Template Known Secondary structure						T	S		S		B	S		T	T	S								.	.	T																		T		S																									T	T	S	T	T
Template Predicted Secondary structure																								.	.
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.			360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		418	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	T	A	V	E	R	G	N	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	S	T	Q	D	V	L	K	S	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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