Job Description P0AG80 Confidence 99.98% Date Thu Jan 5 11:28:23 GMT 2012 Rank 53 Aligned Residues 280 % Identity 13% Template c2v84A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:spermidine/putrescine abc transporter, periplasmic PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum Resolution 1.78 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	P	F	W	H	S	M	E	G	E	L	G	K	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	V	Y	E	V	G	T	A	T	M	M	A	S	K	A	I	K	P	V	Y
Query Conservation
Alig confidence														.	.	.	.												.																						.	.	.
Template Conservation														.	.	.	.												.																						.	.	.
Template Sequence		V	L	Y	L	Y	N	W	T	Y	Y	T	P	.	.	.	.	T	S	L	I	K	K	F	E	Q	Q	Y	.	N	V	Q	V	V	Y	D	D	Y	A	S	N	E	D	M	F	A	K	L	S	I	.	.	.	G	A	S	G	Y	D	L	V	V	P	S	G	D	F	V	S	I	M	K	R	K	H	L	L	E	K	I	D
Template Known Secondary structure									T	T	T	S		.	.	.	.												.	T									S										S	S	.	.	.	S			S		S					B										T	T
Template Predicted Secondary structure														.	.	.	.												.																						.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.					20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A	D	Y	A	A	K	L	K	A	S	G	M	K
Query Conservation
Alig confidence											.	.	.	.	.	.																																				.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.																																				.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Sequence		L	S	K	I	P	N	V	Q	F	.	.	.	.	.	.	I	K	E	S	V	R	A	R	I	A	Y	D	P	K	M	E	Y	S	V	P	Y	Y	L	G	A	A	G	I	A	V	N	K	K	A	V	.	.	.	.	.	.	.	P	S	Y	A	R	T	W	S	I	F	S	R	.	.	.	.	.	.	.	K	D	L	A
Template Known Secondary structure		G	G	G		G	G	G	G	G	.	.	.	.	.	.	B									T	T	S	T	T		S	S															T	T	T		.	.	.	.	.	.	.		S			S	S	G	G	G	G	G		.	.	.	.	.	.	.	G	G	G	T
Template Predicted Secondary structure											.	.	.	.	.	.																																				.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.							.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.								.	.	.	.	.	.	130	.	.	.	.	.								.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	N	N	G	F	D	G	T	D	A	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G	D	F	S	Y	V	G	R	K	D	E	S	T	E	K	F	Y	N	G	D	C	A
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Sequence		Y	R	M	S	M	M	D	D	M	R	E	V	M	G	A	A	L	A	S	L	G	Y	N	V	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	E	Q	E	L	A	Q	A	A	I	L	V	T	D	H	W	K	P	N	L	.	.	V	K	F	D	S	D	G	Y	A	K	S	F	A	S	G	D	F	V
Template Known Secondary structure		T	S					S													T	T			T	T		.	.	.	.	.	.	.	.	.	.	.	.	.																	T	G	G	G		.	.					S	S	S								T	S		S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.														.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	T	A	S	S	G	S	L	A	N	I	R	E	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	N	A	I	I	G	G	A	S	L	W	V	M	Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A	K	P	E	N	A	A	E	W	H	Q	K	T	G
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	H	G	F	A	E	A	F	F	A	E	T	P	E	A	M	H	E	H	I	D	F	F	I	P	Q	D	V	A	S	.	.	.	.	.	.	.	.	.	P	V	Y	V	D	S	F	C	I	P	K	G	A	R	N	R	D	L	A	H	A	F	I	N	F	F	L	E	P	A	H	Y	A	E	F	L	D	T	F	G
Template Known Secondary structure														S		G	G	G	G	G	G							T	T	T	T		.	.	.	.	.	.	.	.	.								B			T	T		S													T	S												T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.										.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	P	I	T	K	A	A	Y	D	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	P	S	T	I	H	R	E	A	A	A	Y
Template Known Secondary structure					S	S	B	T	T	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions