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Job DescriptionP0AG80
Confidence100.00%DateThu Jan 5 11:28:23 GMT 2012
Rank4Aligned Residues395
% Identity16%Templatec2uvgA_
PDB info PDB header:sugar-binding proteinChain: A: PDB Molecule:abc type periplasmic sugar-binding protein; PDBTitle: structure of a periplasmic oligogalacturonide binding2 protein from yersinia enterocolitica
Resolution2.2 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60.........70.........80.........90.........100....
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Query Sequence  TTIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPV
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Template Sequence  VNLRMSWWGGNGRHEVTLKALEEFHKEHPNINVKAEYTG. WDGHLSRLTTQIAGGTEPDVMQTNWNWLPIFSKDGTGFYN
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TT

.STTTT


S
TT
TTS
SB

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   28.30.........40.........50.........60...... ...70.........80.........90.........100......
 
   105....110.........120.........130.........140.........150.........160.........170.........180....
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Query Sequence  YDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLKASGM
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Template Sequence  LFSVKEQL. . . . . DLAQFDPKELQQTTVNGKLNGIPISVTARIFYFNDATWAKAGLEYP. . . KTWDELLAAGQVFKEKLG
Template Known Secondary structure  GGGGTTTS.....
GGGS
TTT

T



...SST
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   107..110.... .....120.........130.........140.........150.........160 .........170........
 
   185....190.........200.........210.........220.........230.........240........ .250........
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Query Sequence  KCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEMNKKGDFSY. . . . . . VGRKDESTEK
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Template Sequence  DQYYPVVLEHQDTLALIRSYMTQK. . YNIPTIDEANKKFAYSPEQWVEFFTMYKTMVDNHVMPSTKYYASFGKSNMYEMK
Template Known Secondary structure  TT
BS
B

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STTTT


TTSS

TT
SS
GGGST
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   179180.........190.........200.. .......210.........220.........230.........240.........250......
 
   259260.........270.........280.........290.........300.........310.........320.........330........
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Query Sequence  FYNGDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAA
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Template Sequence  PWNGEWAGTYMWNSTITKYSDNLTKPAKLVLGPYPMLPGAKDAGLFFKP. AQMLSIGKSTKHPQESAMLINFLLNSKEGV
Template Known Secondary structure  T


SB
GGGTS
TT







TT
S




.BS

S
S
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   257..260.........270.........280.........290.........300..... ....310.........320.........330.....
 
   339340.........350.........360.........370.........380.........390.........400.........410........
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Query Sequence  EWHQKTGYLPITKAAYDLTREQGFYEKNPGADTATRQMLNKPPLPFTKGLRLGNMPQIRVIVDEELESVWTGKKTPQQAL
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Template Sequence  ELGLERGVPLSATAVTQLRASGVIKDEDPSVAGLNMALELPHKMTTSPYFDD. . . PQIVSLFGDAIQYIDYGQKTVQETA
Template Known Secondary structure 

TTTTSSB
STT
S
SSSS






GGGG
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   337..340.........350.........360.........370.........380........ .390.........400.........410...
 
   419420.........430....
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Query Sequence  DTAVERGNQLLRRFEK
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Template Sequence  EYFNKQGDRILKRAMR
Template Known Secondary structure  T
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   415....420.........430
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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