Job Description P0AG80 Confidence 55.96% Date Thu Jan 5 11:28:23 GMT 2012 Rank 115 Aligned Residues 255 % Identity 15% Template c2qpqC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis Resolution 1.92 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	V	T	T	I	P	F	W	H	S	M	E	G	E	L	G	K	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	V	Y	E	V	G	T	A	T	M	M	A	S	K	A	I
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		N	K	P	L	D	I	I	V	.	T	F	P	P	G	G	G	T	D	M	L	A	R	L	I	G	N	Y	L	T	E	S	L	G	Q	T	A	V	V	E	N	R	P	G	A	S	G	N	V	G	A	R	L	V	A	D	R	A	P	D	G	Y	S	L	L	M	V	N	S	S	F	A	V	N	P	G	V	F	R	N	L
Template Known Secondary structure			S							.	S	S		T	T	S															T	T	S	S	S										G	G	G									T	S		S	S	S	S							T										S	S
Template Predicted Secondary structure										.
Template SS confidence
		7	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	V	Y	D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A	D	Y	A	A	K	L	K	A
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.															.	.	.
Template Sequence		P	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	K	K	D	F	A	A	V	I	N	V	A	Y	V	P	S	V	F	V	V	P	A	G	.	.	.	.	.	.	.	.	.	.	S	K	Y	K	T	L	G	E	L	M	A	A	A	K	.	.	.	Q
Template Known Secondary structure		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	S																		T	T	.	.	.	.	.	.	.	.	.	.		S			S								T		.	.	.	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
		86	.																											.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.											.	.	.	.	.	.	.	.	120	.	.	.	.	.				.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	M	K	C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	N	N	G	F	D	G	T	D	A	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G	D	F	S	Y	V	G	R	K	D	E	S	T	E	K	F	Y	N
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	N	T	Q	V	T	Y	G	S	C	G	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	Q	H	L	A	G	E	L	L	N	V	S	A	K	T	H	M	V	H	V	P	Y	K	G	C	G	P	A	L	N	D	V	L	G
Template Known Secondary structure		S	S								S	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S														T									S	S										T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.																																	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.								.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.																				.	.
Query SS confidence																							.	.	.	.	.	.	.																				.	.
Query Sequence		G	D	C	A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	Y	A	K	.	.	.	.	.	.	.	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	.	.	N	A	I	I	G	G	A	S	L	W	V	M	Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A
Query Conservation																							.	.	.	.	.	.	.																				.	.
Alig confidence																							.	.	.	.	.	.	.																				.	.
Template Conservation
Template Sequence		S	Q	I	G	L	A	V	V	T	A	S	S	A	I	P	F	I	K	A	G	K	L	Q	A	L	A	V	T	S	K	E	R	S	A	L	L	P	E	V	P	T	V	A	E	Q	G	V	A	G	Y	E	L	N	Q	W	H	G	L	L	V	P	G	A	T	P	M	A	V	R	Q	K	L	Y	D	G	I	A	K	V	M
Template Known Secondary structure		T	S	S	S															T	T	S							S	S	S	S			T	T		T	T	S		B	S	G	G	G	T		T	T													T	T	S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	E	N	A	A	E	W	H	Q	K	T	G	Y	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	R	D	D	V	Q	K	K	L	A	D	L	G	Y	S	T
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions