Job Description P0AG80 Confidence 100.00% Date Thu Jan 5 11:28:23 GMT 2012 Rank 43 Aligned Residues 373 % Identity 16% Template c2i58B_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:sugar abc transporter, sugar-binding protein; PDBTitle: crystal structure of rafe from streptococcus pneumoniae complexed with2 raffinose Resolution 2.80 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		V	T	T	I	P	F	W	H	S	M	E	G	E	L	G	K	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	V	Y	E	V	.	.	G	T	A	T	M	M	A	S	K	A	I
Query Conservation																																																																					.	.
Alig confidence										.																																			.	.	.																						.	.
Template Conservation										.																																			.	.	.
Template Sequence		T	V	T	I	E	Y	F	N	.	Q	K	K	E	M	T	K	T	L	E	E	I	T	R	D	F	E	K	E	N	P	K	I	K	V	K	V	V	N	V	P	N	A	G	.	.	.	E	V	L	K	T	R	V	L	A	G	D	V	P	D	V	V	N	I	Y	P	Q	S	I	E	L	Q	E	W	A	K	A	G	V	F
Template Known Secondary structure										.			G	G	G													T	T		T	T									S	S			.	.	.									T	T				S						T	T	S									T	T		B
Template Predicted Secondary structure										.																																			.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	V	Y	D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A	D	Y	A	A	K	L	K	A
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.																																															.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.																																															.	.	.
Template Sequence		E	D	L	S	N	K	D	.	.	.	.	.	.	.	.	.	Y	L	K	R	V	K	N	G	Y	A	E	K	Y	A	V	N	E	K	V	Y	N	V	P	F	T	A	N	A	Y	G	I	Y	Y	N	K	D	K	F	E	E	L	G	L	K	V	P	.	.	.	E	T	W	D	E	F	E	Q	L	V	K	D	I	V	A
Template Known Secondary structure					T	T		S	.	.	.	.	.	.	.	.	.	G	G	G	G	B	G	G	G					T		B	T	T	B							B	B																T					.	.	.		B													T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.																																															.	.	.
Template SS confidence
		81	.	.	.	.	.	.										.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.				.	250	.	.	.	.
Predicted Secondary structure																																	.	.	.	.																																					.	.	.
Query SS confidence																																	.	.	.	.																																					.	.	.
Query Sequence		S	G	M	K	C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	.	.	.	.	N	N	G	F	D	G	T	D	A	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G	D	F	S	Y	.	.	.	V	G	R	K	D	E
Query Conservation																																	.	.	.	.																																					.	.	.
Alig confidence																																	.	.	.	.																																					.	.	.
Template Conservation
Template Sequence		K	G	Q	T	P	F	G	I	A	G	A	D	A	W	T	L	N	G	Y	N	Q	L	A	F	A	T	A	T	G	G	G	K	E	A	N	Q	Y	L	R	Y	S	Q	P	N	A	I	K	L	S	D	P	I	M	K	D	D	I	K	V	M	D	I	L	R	I	N	G	S	K	Q	K	N	W	E	G	A	G	Y	T	D
Template Known Secondary structure		T	T				B				T	T		G	G	G	G													T	S	S								T	S	S		T	T				T	T												T	T	S	S	S	T	T		B		T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	E	K	F	Y	N	G	D	C	A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	N	A	I	I	G	G	A	S	L	W	V	M	Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A	K	P
Query Conservation
Alig confidence																															.																																.	.
Template Conservation																															.																																.	.
Template Sequence		V	I	G	A	F	A	R	G	D	V	L	M	T	P	N	G	S	W	A	I	T	A	I	N	E	Q	K	P	N	.	F	K	I	G	T	F	M	I	P	G	K	E	K	G	Q	S	L	T	V	G	A	G	D	L	A	W	S	I	S	A	T	.	.	T	K	H	P	K	E	A	N	A	F	V	E	Y	M	T	R	P
Template Known Secondary structure									T	S	S	S						G	G	G							T			S	.	S							B		B	S	S	T	T			B					B	S	S					B	S	S	.	.		S													T	S
Template Predicted Secondary structure																															.																																.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	A	A	E	W	H	Q	K	T	G	Y	L	P	I	T	K	A	A	Y	D	L	T	R	E	Q	G	F	Y	E	K	N	P	G	A	D	T	A	T	R	Q	M	L	N	K	P	P	L	P	F	T	K	G	L	R	L	G	N	M	P	Q	I	R	V	I	V	D	E	E	L	E	S	V	W	T	G	K	K	T	P
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Sequence		E	V	M	Q	K	Y	Y	D	V	D	G	S	P	T	A	I	E	G	V	K	Q	A	G	E	D	S	P	L	A	G	.	.	.	.	.	.	.	.	.	.	.	M	T	E	Y	A	F	T	D	R	H	L	V	W	L	Q	Q	Y	W	T	S	E	A	D	F	H	T	L	T	M	N	Y	V	L	T	G	.	.	D	K
Template Known Secondary structure															B		B	T	T						T	T	S	T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T	T	T	S	T	T					G	G	G	S	S	S																	.	.
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.												.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370			.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	A	L	D	T	A	V	E	R	G	N	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	G	M	V	N	D	L	N	A	F	F	N	P	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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