Job Description P0AG80 Confidence 100.00% Date Thu Jan 5 11:28:23 GMT 2012 Rank 28 Aligned Residues 372 % Identity 17% Template c2fncA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:maltose abc transporter, periplasmic maltose-binding PDBTitle: thermotoga maritima maltotriose binding protein bound with2 maltotriose. Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	P	F	W	H	S	M	E	G	E	L	G	K	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	V	Y	E	V	G	T	A	T	M	M	A	S	K	A	I	K	P	V	Y
Query Conservation
Alig confidence								.	.																				.											.
Template Conservation								.	.																				.											.
Template Sequence		K	L	T	I	W	C	.	.	S	E	K	Q	V	D	I	L	Q	K	L	G	E	E	F	K	A	K	Y	.	G	I	P	V	E	V	Q	Y	V	D	.	F	G	S	I	K	S	K	F	L	T	A	A	P	Q	G	Q	G	A	D	I	I	V	G	A	H	D	W	V	G	E	L	A	V	N	G	L	I	E	P	I	P
Template Known Secondary structure								.	.																				.	S										.												G	G	G	T		S		S						G	G	G							T	T		B
Template Predicted Secondary structure								.	.																				.											.
Template SS confidence
		6	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	N	S	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A	D	Y	A	A	K	L	K	A	S	G	M	K
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Template Sequence		N	F	S	.	.	.	.	.	.	.	.	.	D	L	K	N	F	Y	D	T	A	L	K	A	F	S	Y	G	G	K	L	Y	G	V	P	Y	A	M	E	A	V	A	L	I	Y	N	K	D	Y	V	D	S	V	.	.	.	.	.	.	.	P	K	T	M	D	E	L	I	E	K	A	K	Q	I	D	E	E	Y	G	G
Template Known Secondary structure				G	.	.	.	.	.	.	.	.	.	G	G	G	G	B								T			T	T																		T	T	T		S	S		.	.	.	.	.	.	.		S	B															T	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Template SS confidence
		82	.	.										.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.								.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	.	F	A	S	K	N	N	G	F	D	G	T	D	A	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G	D	F	S	Y	V	G	R	K	D	E	S	T	E	K	F	Y	N	G	D	C
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		E	V	R	G	F	I	Y	D	V	A	N	F	Y	F	S	A	P	F	I	L	G	Y	G	G	Y	V	F	K	E	T	P	Q	G	L	D	V	T	D	I	G	L	A	N	E	G	A	V	K	G	A	K	L	I	K	R	M	I	D	E	G	V	L	T	P	G	D	N	Y	G	T	M	D	S	M	F	K	E	G	L	A
Template Known Secondary structure		S	S							T	T												T	T								T	T									T	T	S																T	T	S	S		T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	N	A	I	I	G	G	A	S	L	W	V	M	Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	.	D	F	L	A	K	P	E	N	A	A	E	W	H	Q	K
Query Conservation																																																																		.
Alig confidence																		.	.	.																																	.	.												.
Template Conservation																		.	.	.																																	.	.
Template Sequence		A	M	I	I	N	G	L	W	A	I	K	S	Y	K	D	A	.	.	.	G	I	N	Y	G	V	A	P	I	P	E	L	E	P	G	V	P	A	K	P	F	V	G	V	Q	G	F	M	I	N	A	K	.	.	S	P	N	K	V	I	A	M	E	F	L	T	N	F	I	A	R	K	E	T	M	Y	K	I	Y	L	A
Template Known Secondary structure								G	G	G							T	.	.	.	T										B	S	B	T	T	B														B	T	T	.	.		T	T											T	T	T	S
Template Predicted Secondary structure																		.	.	.																																	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	Y	L	P	I	T	K	A	A	Y	D	L	T	R	E	Q	G	F	Y	E	K	N	P	G	A	D	T	A	T	R	Q	M	L	N	K	P	P	L	P	F	T	K	G	L	R	L	G	N	M	P	Q	I	R	V	I	V	D	E	E	L	E	S	V	W	T	G	K	K	T	P	Q	Q	A	L	D	T	A	V	E
Query Conservation
Alig confidence														.	.	.	.	.	.																							.	.	.	.	.
Template Conservation														.	.	.	.	.	.																							.	.	.	.	.
Template Sequence		D	P	R	L	P	A	R	K	D	V	L	E	.	.	.	.	.	.	L	V	K	D	N	P	D	V	V	A	F	T	Q	S	A	S	M	G	T	P	M	P	.	.	.	.	.	N	V	P	E	M	A	P	V	W	S	A	M	G	D	A	L	S	I	I	I	N	G	Q	A	S	V	E	D	A	L	K	E	A	V	E
Template Known Secondary structure		S		S			S	B						.	.	.	.	.	.			T	T													T						.	.	.	.	.		S	G	G	G	T	T														T	T	S	S
Template Predicted Secondary structure														.	.	.	.	.	.																							.	.	.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.							.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.						.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		424	.	.	.	.	.	430	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	N	Q	L	L	R	R	F	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	K	A	Q	I	E	K	G	S
Template Known Secondary structure									T	T	T
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions