Job Description P0AG80 Confidence 100.00% Date Thu Jan 5 11:28:23 GMT 2012 Rank 30 Aligned Residues 381 % Identity 15% Template c2b3fD_ PDB info PDB header:sugar binding protein Chain: D: PDB Molecule:glucose-binding protein; PDBTitle: thermus thermophilus glucose/galactose binding protein2 bound with galactose Resolution 1.56 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																									.	.																													.	.
Query SS confidence																																									.	.																													.	.
Query Sequence		T	T	I	P	F	W	H	S	M	E	G	E	L	G	K	E	V	D	S	L	A	Q	R	F	N	A	E	N	P	D	Y	K	I	V	P	T	Y	K	G	.	.	N	Y	E	Q	N	L	S	A	G	I	A	A	F	R	T	G	N	A	P	A	I	L	Q	V	Y	E	V	G	.	.	T	A	T	M	M	A	S	K	A
Query Conservation																																									.	.																													.	.
Alig confidence																																									.	.																													.	.
Template Conservation
Template Sequence		M	K	L	E	I	F	S	W	W	A	G	D	E	G	P	A	L	E	A	L	I	R	L	Y	K	Q	K	Y	P	G	V	E	V	I	N	A	T	V	T	G	G	A	G	V	N	A	R	A	V	L	K	T	R	M	L	G	G	D	P	P	D	T	F	Q	V	H	A	G	M	E	L	I	G	T	W	V	V	A	N	R
Template Known Secondary structure									S			G	G	G																T	T											G	G	G													T	T				S						T	T					T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		I	K	P	V	Y	D	V	F	K	E	A	G	I	Q	F	D	E	S	Q	F	V	P	T	V	S	G	Y	Y	S	D	S	K	T	G	H	L	L	S	Q	P	F	N	S	.	S	T	P	V	L	Y	Y	N	K	D	A	F	K	K	A	G	L	D	P	E	Q	P	P	K	T	W	Q	D	L	A	D	Y	A	A	K	L
Query Conservation																																													.
Alig confidence																	.	.	.	.	.																								.																					.	.	.
Template Conservation																	.	.	.	.	.																																													.	.	.
Template Sequence		M	E	D	L	S	A	L	F	R	Q	E	G	W	L	Q	.	.	.	.	.	A	F	P	K	G	L	I	D	L	I	S	Y	K	G	G	I	W	S	V	P	V	N	I	H	R	S	N	V	M	W	Y	L	P	A	K	L	K	G	W	G	V	N	P	P	.	.	.	R	T	W	D	K	F	L	A	T	C	Q	T	L
Template Known Secondary structure		B											T		T	T	.	.	.	.	.	T	S											T	T									B			S														T					.	.	.	S	S
Template Predicted Secondary structure																	.	.	.	.	.																																													.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.						.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		K	A	S	G	M	K	C	G	Y	A	S	G	W	Q	G	W	I	Q	L	E	N	F	S	A	W	N	G	L	P	F	A	S	K	N	N	G	F	D	G	T	D	A	V	L	E	F	N	K	P	E	Q	V	K	H	I	A	M	L	E	E	M	N	K	K	G	D	F	S	Y	.	V	G	R	K	D	E	S	T	E	K
Query Conservation																																																																							.
Alig confidence														.	.																																																								.
Template Conservation														.	.
Template Sequence		K	Q	K	G	L	E	A	P	L	A	L	G	.	.	E	N	W	T	Q	Q	H	L	W	E	S	V	A	L	A	V	L	G	P	D	D	W	N	N	L	W	N	G	K	L	K	F	T	D	P	K	A	V	R	A	W	E	V	F	G	R	V	L	D	C	A	N	K	D	A	A	G	L	S	W	Q	Q	A	V	D	R
Template Known Secondary structure				T	T		S							.	.	S																										T	T	S	S		T	T	S															T	T	B		T	T	G	G	G
Template Predicted Secondary structure														.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Y	N	G	D	C	A	M	T	T	A	S	S	G	S	L	A	N	I	R	E	Y	A	K	F	N	Y	G	V	G	M	M	P	Y	D	A	D	A	K	D	A	P	Q	N	A	I	I	G	G	A	S	L	W	V	M	Q	G	K	D	K	E	T	Y	T	G	V	A	K	F	L	D	F	L	A	K	P	E	N	A	A
Query Conservation
Alig confidence																																																.	.	.	.
Template Conservation																																																.	.	.	.
Template Sequence		V	V	Q	G	K	A	A	F	N	I	M	G	D	W	A	A	G	Y	M	T	T	T	L	K	L	K	P	G	T	D	F	A	W	A	P	S	P	G	T	Q	G	V	F	M	M	L	.	.	.	.	S	D	S	F	G	L	P	K	G	A	K	N	R	Q	N	A	I	N	W	L	R	L	V	G	S	K	E	G	Q	D
Template Known Secondary structure				T	T	S		S						T									T	T				B	T	T	T	B						T	T		T	T						.	.	.	.							B	T	T		T	T												T	S
Template Predicted Secondary structure																																																.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.					.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	W	H	Q	K	T	G	Y	L	P	I	T	K	A	A	Y	D	L	T	R	E	Q	G	F	Y	E	K	N	P	G	A	D	T	A	T	R	Q	M	L	N	K	P	P	L	P	F	T	K	G	L	R	L	G	N	M	P	Q	I	R	V	I	V	D	E	E	L	E	S	V	W	T	G	K	K	T	P	Q	Q	A	L
Query Conservation
Alig confidence																						.	.	.	.	.	.	.																												.																			.
Template Conservation																						.	.	.	.	.	.	.																												.																			.
Template Sequence		T	S	N	P	L	K	G	S	I	A	A	R	L	D	S	D	P	S	K	Y	.	.	.	.	.	.	.	N	A	Y	G	Q	S	A	M	R	D	W	R	S	N	R	I	V	G	S	L	V	H	G	A	V	A	P	.	E	S	F	M	S	Q	F	G	T	V	M	E	I	F	L	Q	T	R	.	N	P	Q	A	A	A
Template Known Secondary structure								S		B		S	S	T	T			G	G	G	S	.	.	.	.	.	.	.														S						T	T	T	T	S	S	S		.																			.
Template Predicted Secondary structure																						.	.	.	.	.	.	.																												.																			.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.								.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.
		419	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	A	V	E	R	G	N	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	A	Q	A	I	A	D	Q	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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