Job Description P32695 Confidence 100.00% Date Thu Jan 5 11:50:18 GMT 2012 Rank 13 Aligned Residues 257 % Identity 16% Template c3l5aA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh/flavin oxidoreductase/nadh oxidase; PDBTitle: crystal structure of a probable nadh-dependent flavin oxidoreductase2 from staphylococcus aureus Resolution 1.65 Å

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		3	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20									.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.															.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.															.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	K	T	D	.	V	H	W	S	G	R	F	S	V	A	P	M	L	D	.	.	.	.	.	.	.	.	W	T	D	R	H	C	R	Y	F	L	R	L	L	S	R	N	T	L	L	Y	T	E	M	V	T	T	G	A	I	I	H	G	K	G	D	Y	L	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.															.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.															.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	L	P	N	G	I	K	I	S	N	R	F	V	L	S	P	X	T	V	N	A	S	T	K	E	G	Y	I	T	K	A	D	L	A	Y	A	A	R	R	S	N	S	A	G	X	Q	V	T	G	A	A	Y	I	E	P	Y	G	K	L	F	E	Y	G	F	N	I	D	H	D	A	C	I	P	G	L	T	N	X	A	S
Template Known Secondary structure				T	T	S				S	S	S											S		T	T														T	T	T	S		S									S	S	G	G	G			S	T	T					S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.																																									.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	S	E	E	E	H	P	V	A	L	Q	L	G	G	S	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	L	A	Q	C	A	K	L	A	E	A	R	G	Y	D	E	I	N	L	N	V
Query Conservation		.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	X	K	Q	H	G	S	L	A	I	I	Q	L	A	H	A	G	R	F	S	N	Q	A	I	L	N	F	G	K	V	Y	G	P	S	P	X	T	L	H	S	P	I	E	H	V	V	I	A	X	S	H	E	K	I	N	S	I	I	Q	Q	Y	R	D	A	T	L	R	A	I	K	A	G	F	D	G	V	E	I	S	I
Template Known Secondary structure					T	T	S											G	G	G									S					S	S						S	S	S	S																												T	T		S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		98	.										100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.							.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.													.																						.	.	.	.														.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.													.																						.	.	.	.														.	.	.	.	.	.
Query Sequence		G	C	.	.	.	.	.	.	.	.	.	P	S	D	R	V	Q	N	G	M	F	G	A	.	C	L	M	G	N	A	Q	L	V	A	D	C	V	K	A	M	R	D	V	V	S	.	.	.	.	I	P	V	T	V	K	T	R	I	G	I	D	D	.	.	.	.	.	.	Q	D	S	Y	E	F	L	C	D	F	I	N
Query Conservation				.	.	.	.	.	.	.	.	.													.																						.	.	.	.														.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.													.																						.	.	.	.														.	.	.	.	.	.
Template Conservation
Template Sequence		A	Q	R	L	L	I	Q	T	F	F	S	T	F	S	N	R	R	T	D	H	Y	G	A	D	S	L	K	N	R	A	R	L	C	L	E	V	X	R	A	V	Q	E	V	I	D	K	E	A	P	D	N	F	I	L	G	F	R	A	T	P	E	E	T	R	G	S	D	L	G	Y	T	I	D	E	F	N	Q	L	I	D
Template Known Secondary structure			T	T	S								T	T	T					S	T	T	S	T	T																										T	T									S					T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	S	G	K	G	E	C	E	M	F	I	I	H	A	R	K	A	W	L	S	G	L	S	P	K	E	N	R	E	I	P	P	L	D	Y	P	R	V	Y	Q	L	K	R	D	F	P	H	L	T	M	S	I	N	G	G	I	K	S	L	E	E	A	K	A	H	L	Q	H	M	D	G	V	M	V	G	R	E	A	Y
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence		W	V	X	D	V	S	N	I	Q	Y	L	A	I	A	S	W	G	R	H	I	Y	Q	N	T	S	R	T	P	G	D	H	F	G	R	P	V	N	Q	I	V	Y	E	H	L	A	G	.	R	I	P	L	I	A	S	G	G	I	N	S	P	E	S	A	L	D	A	L	Q	H	A	D	X	V	G	X	S	S	P	F	V
Template Known Secondary structure							S										T	T			G	G	G		B				S	S	T	T	T	T	S	B										T	T	.	S	S						S	S			S								G	G	G		S					S	T
Template Predicted Secondary structure																																																.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	P	G	I	L	A	A	V	D	R	E	I	F	G	S	S	D	T	D	A	D	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	P	D	F	V	H	K	L	A	E	Q	R	P	H	D	I	N	L	E	F	S	X
Template Known Secondary structure				T	T							T	T		G	G	G							G
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions