Job Description P32695 Confidence 100.00% Date Thu Jan 5 11:50:18 GMT 2012 Rank 12 Aligned Residues 261 % Identity 13% Template c3k30B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:histamine dehydrogenase; PDBTitle: histamine dehydrogenase from nocardiodes simplex Resolution 2.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.						.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.																	.	50	.	.	.	.	.	.	.	.		.
Predicted Secondary structure																					.	.	.	.	.									.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query SS confidence																					.	.	.	.	.									.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query Sequence		E	K	T	D	V	H	W	S	G	R	F	S	V	A	P	M	L	D	W	.	.	.	.	.	T	D	R	H	C	R	Y	F	.	L	R	L	L	S	R	N	T	L	L	Y	T	E	M	V	T	T	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	H	G	K	G	D	Y	L	A	.	Y
Query Conservation																					.	.	.	.	.									.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Alig confidence																					.	.	.	.	.									.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		Q	I	G	P	F	T	T	K	N	R	F	Y	Q	V	P	H	C	N	G	M	G	Y	R	D	P	S	A	Q	A	S	M	R	K	I	K	A	E	G	G	W	S	A	V	C	T	E	Q	V	E	I	H	A	T	S	D	I	A	P	F	I	E	L	R	I	W	D	D	Q	D	L	P	A	L	K	R	I	A	D	A	I
Template Known Secondary structure				T	T				S	S	S									S		S	S	S															T	T		S										S	G	G	G			T	T	S						S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.																																										.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	E	E	E	H	P	V	A	L	Q	L	G	G	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	A	L	A	Q	C	A	K	L	A	E	A	R	G	Y	D	E	I	N	L	N	V	G
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	E	G	G	G	L	A	G	I	E	L	A	H	N	G	M	N	A	P	N	Q	L	S	R	E	T	P	L	G	P	G	H	L	P	V	A	P	D	T	I	A	P	I	Q	A	R	A	M	T	K	Q	D	I	D	D	L	R	R	W	H	R	N	A	V	R	R	S	I	E	A	G	Y	D	I	V	Y	V	Y	G	A
Template Known Secondary structure					T											G	G	G				T	T	T							S	S	S					S	S				S																													T		S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		99											100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.					.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.
Query Sequence		C	.	.	.	.	.	.	.	.	.	.	P	S	D	R	V	Q	N	G	M	F	G	A	C	L	M	G	N	A	Q	L	V	A	D	C	V	K	A	M	R	D	V	V	S	I	P	V	T	V	K	T	R	I	G	I	D	D	Q	D	.	.	.	.	S	Y	E	F	L	C	D	F	I	N	T	V	S	G	K	G	E
Query Conservation			.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.															.	.
Template Conservation																																																																															.	.
Template Sequence		H	G	Y	S	G	V	H	H	F	L	S	K	R	Y	N	Q	R	T	D	E	Y	G	G	S	L	E	N	R	M	R	L	L	R	E	L	L	E	D	T	L	D	E	C	A	G	R	A	A	V	A	C	R	I	T	V	E	E	E	I	D	G	G	I	T	R	E	D	I	E	G	V	L	R	E	L	G	E	.	.	L
Template Known Secondary structure		T	T		S								T	T	T					S	T	T	S	S	S					T															S	S	S	S								S				S	T	T	S														T	T	.	.	S
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		C	E	M	F	I	I	H	A	R	K	A	W	L	S	G	L	S	P	K	E	N	R	E	I	P	P	L	D	Y	P	R	V	Y	Q	L	K	R	D	F	P	H	L	T	M	S	I	N	G	G	I	K	S	L	E	E	A	K	A	H	L	Q	H	.	.	M	D	G	V	M	V	G	R	E	A	Y	Q	N	P	G	I
Query Conservation																																																																.	.
Alig confidence																.	.	.																																														.	.
Template Conservation																.	.	.
Template Sequence		P	D	L	W	D	F	A	M	G	S	W	E	G	D	.	.	.	S	V	T	S	R	F	A	P	E	G	R	Q	E	E	F	V	A	G	L	K	K	L	T	T	K	P	V	V	G	V	G	R	F	T	S	P	D	A	M	V	R	Q	I	K	A	G	I	L	D	L	I	G	A	A	R	P	S	I	A	D	P	F	L
Template Known Secondary structure		S	S							S	S					.	.	.	S			T	T	T			T	T	T	T					T	T	T	G	G	G		S	S						S														T	T	S		S					S							T	T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270				.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	V	D	R	E	I	F	G	S	S	D	T	D	A	D	P	V	A	V	V	R	A	M	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	N	K	I	R	D	G	R	L	N	L	I	R	E	C	I	G	C	N	I	C	V	S	G	D	L
Template Known Secondary structure								T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions