 |
Job Description | P32695 | Confidence | 96.79% | Date | Thu Jan 5 11:50:18 GMT 2012 |
Rank | 235 | Aligned Residues | 99 |
% Identity | 17% | Template | c3js3C_ |
PDB info |
PDB header:lyase | Chain: C: PDB Molecule:3-dehydroquinate dehydratase; |
PDBTitle: crystal structure of type i 3-dehydroquinate dehydratase (arod) from2 clostridium difficile with covalent reaction intermediate
|
Resolution | 2.20 Å |
|
 |
  |   |
61 | . | . | . | . | |
. | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | |
. | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  | . |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
Query Sequence |   |
E | E | E | H | P | . |
V | A | L | Q | L | G | G | S | D | P | A | A | L | A | Q | C | A | K | L | A | E | A | R | G | Y | D | E | I | N | L | N | V | G | C | P | S | D | R | V | Q | N | G | M | F | G | A | C | L | M | G | N | A | Q | L | V | A | D | C | V | K | A | M | R | D | V | V | . |
S | I | P | V | T | V | K |
Query Conservation |   |
  |   |   |   |
| . |   |   |
|
|
|   |
|   |
|
|   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |
|   |
|
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|   |   |   | . |   |   |
|
|   |
|
|
Alig confidence |   |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |
|   |
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|   |
|   |   |   | . | . |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|
|
|   |
|
Template Sequence |   |
G | E | G | R | P | K | I | C | V | P | I | I | G | K | N | K | K | D | I | I | K | E | A | K | E | L | K | D | A | C | L | D | I | I | E | W | . |
. |
. |
. |
. |
. |
. |
. |
. |
R | V | D | F | F | E | N | V | . |
. |
E | N | I | K | E | V | K | E | V | L | Y | E | L | R | S | Y | I | H | D | I | P | L | L | F | T |
Template Known Secondary structure |   |
T | S | S | S |
|  |  |  |  |  |  |
|
| S | S |  |  |  |  |  |  |  |  |  |  | T | T | T | S | S |
| S |  |  |  |  | . | . | . | . | . | . | . | . | . |  | G | G | G |
| T | T | T | . | . | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
|  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . | . | . | . | . | . | . | . |  |
|  |  |
|
|
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | 50 | . | . | . | . | . | . | |
|
. | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
  |
  |   |
139 | 140 | . | . | . | . | |
|
|
. | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 |
Predicted Secondary structure |   |
 |  |
|
|
|
| . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | R | I | G | I | D | . |
. |
. |
D | Q | D | S | Y | E | F | L | C | D | F | I | N | T | V | S | G | K | G | E | C | E | M | F | I | I |
Query Conservation |   |
|
|
|
|   |
| . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|
Template Sequence |   |
F | R | S | V | V | E | G | G | E | K | L | I | S | R | D | Y | Y | T | T | L | N | K | E | I | S | N | T | G | L | V | D | L | I | D | V |
Template Known Secondary structure |   |
|
|
| G | G | G | T |
| S |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
|
| S |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|