 |
Job Description | P32695 | Confidence | 70.27% | Date | Thu Jan 5 11:50:18 GMT 2012 |
Rank | 476 | Aligned Residues | 112 |
% Identity | 13% | Template | c3e96B_ |
PDB info |
PDB header:lyase | Chain: B: PDB Molecule:dihydrodipicolinate synthase; |
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 bacillus clausii
|
Resolution | 1.80 Å |
|
 |
  |   |
74 | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | P | A | A | L | A | Q | C | A | K | L | A | E | A | R | G | Y | D | E | I | N | L | N | V | G | C | P | S | D | R | V | Q | N | G | M | F | G | A | C | L | M | G | N | A | Q | L | V | A | D | C | V | K | A | M | R | D | V | V | S | I | P | V | T | V | K | T | R | I | G | I | D | D | Q | D | S | Y | E | F | L | C |
Query Conservation |   |
|
|   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |
|   |
|
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|   |   |   |   |   |
|
|   |
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|   |
|
|   |
| . | . | . | . | . | . | . | . | . | . |   |
|
|
|
|
|   |   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   | . | . | . | . |   |   |
|   |   |   |
|
Template Sequence |   |
D | W | H | H | Y | K | E | T | V | D | R | I | V | D | N | G | I | D | V | I | V | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
C | G | N | T | S | E | F | Y | A | L | S | L | E | E | A | K | E | E | V | R | R | T | V | E | Y | V | H | G | R | A | L | V | V | A | G | I | G | . |
. |
. |
. |
Y | A | T | S | T | A | I |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  |
| T | . | . | . | . | . | . | . | . | . | . | T | S | T | T | T | T | G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |  |  |  |  |  |  |
| . | . | . | . | S | S |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
| . | . | . | . |
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
31 | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | |
|
|
|
90 | . | . | . | . | . | . |
  |
  |   |
154 | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | F | I | N | T | V | S | G | K | G | E | C | E | M | F | I | I | H | A | R | K | A | W | L | S | G | L | S | P | K | E | N | R | E | I | P | P | L | D | Y | P | R | V | Y | Q | L | K | R | D | F | P | H | L | T | M | S | I |
Query Conservation |   |
  |   |   |   |   |
|   |   |   |   |
|
|   |   |
|   |
|
|   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
| . |   |   |   |
|
|
|   |
|
|   |   |
|
|   |
| . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |
|   | . |   |   |
|
|   |
|
Template Sequence |   |
E | L | G | N | A | A | . |
K | A | A | G | A | D | A | V | M | I | H | M | P | I | H | . |
. |
. |
. |
. |
. |
. |
. |
. |
P | Y | V | T | A | G | G | V | Y | A | Y | F | R | D | I | I | E | A | L | . |
D | F | P | S | L | V |
Template Known Secondary structure |   |
 |  |  |  |  |  | . |  |  |  | T |
| S |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |
| S |
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  | . |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
97 | . | . | 100 | . | . | |
. | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | |
. | . | . | 140 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|