Job Description P32695 Confidence 100.00% Date Thu Jan 5 11:50:18 GMT 2012 Rank 1 Aligned Residues 314 % Identity 45% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		H	W	S	G	R	F	S	V	A	P	M	L	D	W	T	D	R	H	C	R	Y	F	L	R	L	L	S	R	N	T	L	L	Y	T	E	M	V	T	T	G	A	I	I	H	G	K	G	.	D	Y	L	A	Y	S	E	E	E	H	P	V	A	L	Q	L	G	G	S	D	P	A	A	L	A	Q	C	A	K	L	A	E
Query Conservation																																																	.
Alig confidence																																																	.
Template Conservation
Template Sequence		X	L	D	P	R	L	S	V	A	P	X	V	D	R	T	D	R	H	F	R	F	L	V	R	Q	V	S	L	G	V	R	L	Y	T	E	X	T	V	D	Q	A	V	L	R	G	N	R	E	R	L	L	A	F	R	P	E	E	H	P	I	A	L	Q	L	A	G	S	D	P	K	S	L	A	E	A	A	R	I	G	E
Template Known Secondary structure						S							T	T	T		S												S	S	S	B														S										G	G	G		S								S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	G	Y	D	E	I	N	L	N	V	G	C	P	S	D	R	V	Q	N	G	M	F	G	A	C	L	M	G	N	A	Q	L	V	A	D	C	V	K	A	M	R	D	V	V	S	I	P	V	T	V	K	T	R	I	G	I	D	D	Q	D	S	Y	E	F	L	C	D	F	I	N	T	V	S	G	K	G	E	C	E
Query Conservation
Alig confidence																																																																														.
Template Conservation																																																																														.
Template Sequence		A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	.	G	V	K
Template Known Secondary structure			T	T		S										S							T		G	G	G	G	G	G														T	T		S	S								S		B	T	T																	T	.	T
Template Predicted Secondary structure																																																																														.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	I	I	H	A	R	K	A	W	L	S	G	L	S	P	K	E	N	R	E	I	P	P	L	D	Y	P	R	V	Y	Q	L	K	R	D	F	P	H	L	T	M	S	I	N	G	G	I	K	S	L	E	E	A	K	A	H	L	Q	H	M	D	G	V	M	V	G	R	E	A	Y	Q	N	P	G	I	L	A	A	V
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		V	F	V	V	H	A	R	S	A	L	L	.	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	K	R	V	D	G	V	X	L	G	R	A	V	Y	E	D	P	F	V	L	E	E	A
Template Known Secondary structure								S		B		T	.	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S			S									T	T	S	S					S							G	G	G	G	T	T
Template Predicted Secondary structure													.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	E	I	F	G	S	S	D	T	D	A	D	P	V	A	V	V	R	A	M	Y	P	Y	I	E	R	E	L	S	Q	G	T	Y	L	G	H	I	T	R	H	M	L	G	L	F	Q	G	I	P	G	A	R	Q	W	R	R	Y	L	S	E	N	A	H	K	A	G	A	D	I	N	V	L	E	H	A	L	K	L	V
Query Conservation
Alig confidence													.																																																					.	.	.	.	.
Template Conservation													.																																																					.	.	.	.	.
Template Sequence		D	R	R	V	F	G	L	P	R	R	P	.	S	R	L	E	V	A	R	R	X	R	A	Y	L	E	E	E	V	L	K	G	T	P	P	W	A	V	L	R	H	X	L	N	L	F	R	G	R	P	K	G	R	L	W	R	R	L	L	S	E	G	R	S	.	.	.	.	.	L	Q	A	L	D	R	A	L	R	L	X
Template Known Secondary structure					T	S			S				.																		T	T	T			T					T	T	S	G	G	G	G	T	T	S	T	T													S	.	.	.	.	.
Template Predicted Secondary structure													.																																																					.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.						.	.	.	.	.	.	.	.	310	.	.
		327	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		313	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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