Job Description P32695 Confidence 99.63% Date Thu Jan 5 11:50:18 GMT 2012 Rank 57 Aligned Residues 220 % Identity 12% Template c2zrvC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:isopentenyl-diphosphate delta-isomerase; PDBTitle: crystal structure of sulfolobus shibatae isopentenyl2 diphosphate isomerase in complex with reduced fmn. Resolution 2.30 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.							.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.																																	.	.																					.	.	.
Query SS confidence																			.	.	.	.	.	.																																	.	.																					.	.	.
Query Sequence		D	V	H	W	S	G	R	F	S	V	A	P	M	L	D	W	T	.	.	.	.	.	.	D	R	H	C	R	Y	F	L	R	L	L	S	R	N	T	L	L	Y	T	E	M	V	T	T	G	A	I	I	H	G	K	G	.	.	D	Y	L	A	Y	S	E	E	E	H	P	V	A	L	Q	L	G	G	S	D	.	.	.
Query Conservation																			.	.	.	.	.	.																																	.	.																					.	.	.
Alig confidence																			.	.	.	.	.	.															.																		.	.																					.	.	.
Template Conservation																																							.
Template Sequence		R	K	E	I	S	V	P	V	M	V	T	G	M	T	G	G	R	N	E	L	G	R	I	N	K	I	I	A	E	V	A	E	K	F	G	I	P	.	M	G	V	G	S	Q	R	V	A	I	E	K	A	E	A	R	E	S	F	A	I	V	R	K	V	A	P	T	I	P	I	I	A	N	L	G	M	P	Q	L	V	K
Template Known Secondary structure		T				S	S	S									S	S																		T			.													G	G	G	S											S	S	S								G	G	G	G	T	T
Template Predicted Secondary structure																																							.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	A	L	A	Q	C	A	K	L	A	E	A	R	G	Y	D	E	I	N	L	N	V	G	C	P	S	D	R	V	Q	N	G	M	F	G	A	C	L	M	G	N	A	Q	L	V	A	D	C	V	K	A	M	R	D	V	V	S	I	P	V	T	V	K	T	R	I	G	I	D	D	Q	D	S	Y	E	F	L	C	D
Query Conservation
Alig confidence																																						.	.	.	.																																		.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.																																		.	.	.	.	.	.	.
Template Sequence		G	Y	G	L	K	E	F	Q	D	A	I	Q	M	I	E	A	D	A	I	A	V	H	L	N	P	A	Q	E	V	F	Q	P	E	G	E	P	.	.	.	.	E	Y	Q	I	Y	A	L	E	K	L	R	D	I	S	K	E	L	S	V	P	I	I	V	K	E	S	G	N	G	I	S	M	E	.	.	.	.	.	.	.
Template Known Secondary structure		T													T	T		S														S	S	S				.	.	.	.				T														S	S							S	S	S						.	.	.	.	.	.	.
Template Predicted Secondary structure																																						.	.	.	.																																		.	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.					170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.																.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	I	N	T	V	S	G	K	G	E	C	E	M	F	I	I	H	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	A	W	L	S	G	L	S	P	K	E	N	R	E	I	P	P	L	D	Y	P	R	V	Y	Q	L	K	R	D	F	P	H	L	T	M	S	I	N	G	G	I	K	S	L	E	E
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	T	A	K	L	L	Y	S	Y	G	I	K	N	F	D	T	S	G	Q	G	G	T	N	W	I	A	I	E	M	I	R	D	I	R	R	G	N	W	K	A	E	S	A	K	N	F	L	D	W	G	V	P	T	A	A	S	I	M	E	V	R	Y	S	V	P	D	S	F	L	V	G	S	G	G	I	R	S	G	L	D
Template Known Secondary structure		.								T	T									B	T	S	B													T	T		T								T	T	T		S		B												S	T	T							S	S			S
Template Predicted Secondary structure		.
Template SS confidence
			203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		A	K	A	H	L	Q	.	H	M	D	G	V	M	V	G	R	E	A	Y	Q
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		A	A	K	A	I	A	L	G	A	D	I	A	G	M	A	L	P	V	L	K
Template Known Secondary structure									T		S
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions