Job Description P32695 Confidence 91.35% Date Thu Jan 5 11:50:18 GMT 2012 Rank 345 Aligned Residues 239 % Identity 11% Template c2rfgB_ PDB info PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from hahella2 chejuensis at 1.5a resolution Resolution 1.50 Å

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		13	.	.	.	.	.	.	20	.	.	.						.	.	.	.	.	.	30	.	.	.				.	.	.	.	.	.	40	.	.	.							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.											.	.	.											.	.	.	.	.	.
Query SS confidence													.	.	.	.	.											.	.	.											.	.	.	.	.	.
Query Sequence		F	S	V	A	P	M	L	D	W	T	D	.	.	.	.	.	R	H	C	R	Y	F	L	R	L	L	.	.	.	S	R	N	T	L	L	Y	T	E	M	.	.	.	.	.	.	V	T	T	G	A	I	I	H	G	K	G	D	Y	L	A	Y	S	E	E	E	H	P	V	A	L	Q	L	G	G	S	D	P	A	A	L
Query Conservation													.	.	.	.	.											.	.	.											.	.	.	.	.	.
Alig confidence													.	.	.	.	.											.	.	.											.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	I	A	M	I	T	P	F	I	N	G	Q	V	D	E	K	A	L	A	G	L	V	D	W	Q	I	K	H	G	A	H	G	L	V	P	V	G	T	T	G	E	S	P	T	L	T	E	E	E	H	K	R	V	V	A	L	V	A	E	Q	A	Q	G	R	V	P	V	I	A	G	A	G	S	N	N	P	V	E	A
Template Known Secondary structure												T	T																	T	T		S				T	T	S	G	G	G	T	G	G	G	S																	T	T	S	S		B							S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	C	A	K	L	A	E	A	R	G	Y	D	E	I	N	L	N	V	G	C	P	S	D	R	V	Q	N	G	M	F	G	A	C	L	M	G	N	A	Q	L	V	A	D	C	V	K	A	M	R	D	V	V	S	I	P	V	T	V	K	T	R	I	G	I	D	D	Q	D	S	Y	E	F	L	C	D	F	I	N	T
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.
Template Sequence		V	R	Y	A	Q	H	A	Q	Q	A	G	A	D	A	V	L	C	.	.	.	.	.	.	.	.	.	.	.	.	V	A	G	Y	Y	N	R	P	S	Q	E	G	L	Y	Q	H	F	K	M	V	H	D	A	I	D	I	P	I	I	V	Y	N	I	P	P	R	A	V	V	D	.	.	.	I	K	P	E	T	M	A	R
Template Known Secondary structure											T	T		S					.	.	.	.	.	.	.	.	.	.	.	.				T	T	T																			S	S												S			.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.													.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	G	K	G	E	C	E	M	F	I	I	H	A	R	K	A	W	L	S	G	L	S	P	K	E	N	R	E	I	P	P	L	D	Y	P	R	V	Y	Q	L	K	R	D	F	P	H	L	T	M	S	I	N	G	G	I	K	S	L	E	E	A	K	A	H	L	Q	H	M	D	G	V	M	V	G	R	E	A	Y	Q
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Sequence		L	A	A	L	P	R	I	V	G	V	K	D	A	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	A	R	I	S	R	E	R	M	L	I	N	K	P	F	S	F	L	S	G	D	D	M	T	A	I	A	Y	.	.	N	A	S	G	G	Q	G	C	I	S	V	S	A	N	I	A
Template Known Secondary structure				T	S	T	T								S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T							T	T			S							S		G	G	G					.	.			T	T							S	G	G	G	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.																			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	G	I	L	A	A	V	D	R	E	I	F	G	S	S	D	T	D	A	D	P	V	A	V	V	R	A	M	Y	P	Y	I	E	R	E	L	S	Q	G	T	Y	L	G	H	I	T	R	H	M	L	G
Query Conservation
Alig confidence																		.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		P	A	L	Y	G	Q	M	Q	T	A	T	L	Q	G	D	F	.	.	.	.	R	E	A	L	R	I	H	D	L	L	A	P	L	H	E	A	L	F	R	E	P	S	P	A	G	A	K	Y	A	A	S	L
Template Known Secondary structure														T	T			.	.	.	.																			S	S	S	T	T
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.					.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions