Job Description P32695 Confidence 96.33% Date Thu Jan 5 11:50:18 GMT 2012 Rank 257 Aligned Residues 235 % Identity 12% Template c2r8wB_ PDB info PDB header:lyase Chain: B: PDB Molecule:agr_c_1641p; PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58 Resolution 1.80 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.							.	.	.	.	.	.	30	.	.	.				.	.	.	.	.	.	40					.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																		.	.	.	.	.	.											.	.	.								.	.	.	.				.	.
Query SS confidence																		.	.	.	.	.	.											.	.	.								.	.	.	.				.	.
Query Sequence		H	W	S	G	R	F	S	V	A	P	M	L	D	W	T	D	.	.	.	.	.	.	R	H	C	R	Y	F	L	R	L	L	.	.	.	S	R	N	T	L	L	Y	.	.	.	.	T	E	M	.	.	V	T	T	G	A	I	I	H	G	K	G	D	Y	L	A	Y	S	E	E	E	H	P	V	A	L	Q	L	G	G
Query Conservation																		.	.	.	.	.	.											.	.	.								.	.	.	.				.	.
Alig confidence						.												.	.	.	.	.	.											.	.	.								.	.	.	.				.	.
Template Conservation						.
Template Sequence		R	F	K	G	.	L	S	A	F	P	I	T	P	A	D	E	A	G	R	V	D	I	E	A	F	S	A	L	I	A	R	L	D	A	A	E	V	D	S	V	G	I	L	G	S	T	G	I	Y	X	Y	L	T	R	E	E	R	R	R	A	I	E	A	A	A	T	I	L	R	G	R	R	T	L	X	A	G	I	G	A
Template Known Secondary structure		G	G			.									B		T	T			B															T	T		S					S	S	T	T	T	T	G	G	G	S																	T	T	S	S
Template Predicted Secondary structure						.
Template SS confidence
		34	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	P	A	A	L	A	Q	C	A	K	L	A	E	A	R	G	Y	D	E	I	N	L	N	V	G	C	P	S	D	R	V	Q	N	G	M	F	G	A	C	L	M	G	N	A	Q	L	V	A	D	C	V	K	A	M	R	D	V	V	S	I	P	V	T	V	K	T	R	I	G	I	D	D	Q	D	S	Y	E	F	L
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.
Template Sequence		L	R	T	D	E	A	V	A	L	A	K	D	A	E	A	A	G	A	D	A	L	L	L	.	.	.	.	.	.	.	.	.	.	.	.	A	P	V	S	Y	T	P	L	T	Q	E	E	A	Y	H	H	F	A	A	V	A	G	A	T	A	L	P	L	A	I	Y	N	N	P	T	T	T	R	F	T	.	.	.	F	S
Template Known Secondary structure		S	S															T		S					.	.	.	.	.	.	.	.	.	.	.	.					S	S																			S	S								G	G	G	T				.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.													.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.				.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	D	F	I	N	T	V	S	G	K	G	E	C	E	M	F	I	I	H	A	R	K	A	W	L	S	G	L	S	P	K	E	N	R	E	I	P	P	L	D	Y	P	R	V	Y	Q	L	K	R	D	F	P	H	L	T	M	S	I	N	G	G	I	K	S	L	E	E	A	K	A	H	L	Q	H	M	D	G	V	M	V
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Sequence		D	E	L	L	V	R	L	A	Y	I	P	N	I	R	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	X	P	L	P	A	D	A	D	Y	A	G	E	L	A	R	L	R	P	K	L	S	D	D	F	A	I	G	Y	S	G	.	.	D	W	G	C	T	D	A	T	L	A	G	G	D	T	W	Y	S
Template Known Secondary structure										T	S	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T											T	T	T	S		T	T								.	.										T	T		S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.															.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	E	A	Y	Q	N	P	G	I	L	A	A	V	D	R	E	I	F	G	S	S	D	T	D	A	D	P	V	A	V	V	R	A	M	Y	P	Y	I	E	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	A	G	L	L	P	V	P	A	L	Q	L	X	R	A	A	Q	A	G	N	A	E	E	A	K	R	L	D	A	T	F	Q	P	L	W	A	L	F	K	E	F
Template Known Secondary structure		S	G	G	G	T														T	T												T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions