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Job DescriptionP23908
Confidence100.00%DateThu Jan 5 11:40:32 GMT 2012
Rank16Aligned Residues356
% Identity20%Templatec3mruB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:aminoacyl-histidine dipeptidase; PDBTitle: crystal structure of aminoacylhistidine dipeptidase from vibrio2 alginolyticus
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60......... 70.........80
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Query Sequence  PPFIEIYRALIATPSISATEEALDQSNADLITLLADWFKDLGFNVEVQPVPGTRNKFNMLASIG. . . . . QGAGGLLLAGH
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Template Sequence  APLWQFFDKICSIPHPSKHE. . . . . . . EALAQYIVTWATEQGFDVRRDPTG. . . . . . NVFIKKPATPGMENKKGVVLQAH
Template Known Secondary structure  TTS

BTT

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SS

SB

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   14.....20.........30... ......40.........50....... ..60.........70.........80
 
   81........90 .........100.........110.........120.........130 .........140.........150.....
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Query Sequence  TDTVPFDDGR. . . . WTRDPFTLTEHDGKLYGLGTADMKGFFAFILDALRDVDVT. KLKKPLYILATADEETSMAGARYFA
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Template Sequence  IDMVPQKNEDTDHDFTQDPIQPYIDGEWVTAKGTTLGADNGIGMASCLAVLASKEIKHGPIEVLLTIDEEAGMTGAFGLE
Template Known Secondary structure 

B


B
SS



TTTS


TTSSB


T
SS


S
S
SSSTTS

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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   156...160.........170... ......180.........190. ........200.. .......210...
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Query Sequence  ETTALRPDCAIIGEPTSL. . . . . . . . . . . . . . . . . . . QPVRAHKGHISNAIRIQG. QSGHSSDPARG. . VNAIELMHDAI
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Template Sequence  AGW. LKGDILLNTDSEQEGEVYMGCAGGIDGAMTFDITRDAIPAGFITRQLTLKGLKGGHSGCDIHTGRGNANKLIGRFL
Template Known Secondary structure  TTS.


S




TT





TT




BTTTGGGS



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   161.. ......170.........180.........190.........200.........210.........220.........230.........
 
   214.... .220.........230.........240.......
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Query Sequence  GHILQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LRDNLKERYHYEAFTVPYPTLNLGHIHGG. . . . . . .
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Template Sequence  AGHAQELDLRLVEFRGGSLRNAIPREAFVTVALPAENQDKLAELFNYYTELLKTELGKIETDIVTFNEEVATDAQVFAIA
Template Known Secondary structure  T

S
TTB



GGGTTT






S

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   240.........250.........260.........270.........280.........290.........300.........310.........
 
   248.250.........260.........270.........280.........290....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DASNRICACCELHMDIRPLPGMTLNELNGLLNDALAPVSERWPGRLT
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Template Sequence  DQQRFIAALNACPNGVMRMSDEVEGVVETSLNVGVITTEENKVTVLCLIRSLIDSGRSQVEGMLQSV. . . . AELAGAQIE
Template Known Secondary structure  S

S


SSSTT
TTSS....TT
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   320.........330.........340.........350.........360.........370.........380...... ...390.....
 
   295....300... ......310.........320..... ....330......... 340.........350.........360........
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Query Sequence  VDELHPPIP. GYECPPNHQLVEVVEKLLGAKT. . EVVNYCTEAPFIQT. . . LCPTLVLGPGSINQAHQPDEYLETRFIKP
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Template Sequence  FSGAYPGWKPDADSEIMAIFRDMYEGIYGHKPNIMVIHAGLECGLFKEPYPNMDMVSFGPT. IKFPHSPDEKVKIDTVQL
Template Known Secondary structure 

B


SS
TTTTTT

S

SS

GGGGGGSSSS





.STTSTT
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   396...400.........410.........420.........430.........440.........450...... ...460.........470....
 
   369370.........380
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Query Sequence  TRELITQVIHHF
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Template Sequence  FWDQMVALLEAI
Template Known Secondary structure  T
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   475....480......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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