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Job DescriptionP23908
Confidence100.00%DateThu Jan 5 11:40:32 GMT 2012
Rank14Aligned Residues335
% Identity18%Templatec3khzA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:putative dipeptidase sacol1801; PDBTitle: crystal structure of r350a mutant of staphylococcus aureus2 metallopeptidase (sapep/dape) in the apo-form
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20....... ..30.........40.........50.........60.........70......
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Query Sequence  KNKLPPFIEIYRALIATPSISATEEA. . . . . LDQSNADLITLLADWFKDLGFNVEVQPVPGTRNKFNMLASIGQGAGGLL
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Template Sequence  QQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVD. . . . . . HIAGRIEAGKGNDVLG
Template Known Secondary structure  TTTS

B

TTS

SSSTT
TT

T......TT
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   7..10.........20.........30.........40.........50.........60.... .....70.........80
 
   77..80.........90.........100.........110.........120.........130 .........140.........150....
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Query Sequence  LAGHTDTVPFDDGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILDALRDVDVT. . KLKKPLYILATADEETSMAGARYF
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Template Sequence  ILCHVDVVPAG. DGWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRY
Template Known Secondary structure 

B



.TT
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   81........90. ........100.........110.........120.........130.........140.........150.........
 
   155....160.........170.
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Query Sequence  AETTALRPDCAIIGEPT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  FKTE. EMPTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQD
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S
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S
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   160... ......170.........180.........190.........200.........210.........220.........230........
 
   172.......180.........190.........200.........210.........220.........230........
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Query Sequence  . . . . . . . SLQPVRAHKGHISNAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQLRDNLKERYHYEAFTVPYPT. . . . . .
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Template Sequence  FEYFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGM
Template Known Secondary structure  TT

TT
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BTTS
TTSB
TTS
B
TTT
TTSGGGT
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   239240.........250.........260.........270.........280.........290.........300.........310........
 
   239240.........250.........260.........270.........280.........290.........300... ......310.
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Query Sequence  . . . . . . LNLGHIHGGDASNRICACCELHMDIRPLPGMTLNELNGLLNDALAPVSERWPGRLTVDELHPPIP. GYECPPNH
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Template Sequence  KFHTDVMGDVTTNIGVITYDNENAGLFGINLAYPEGFEFEKAMDRFANEIQQY. . . . GFEVKLGKVQPPHYVDKNDPFVQ
Template Known Secondary structure 

TTT
TTT
TT

TGGG....T

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GGG
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   319320.........330.........340.........350.........360.........370. ........380.........390....
 
   312.......320.........330.........340.........350.........360.........370.........380.
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Query Sequence  QLVEVVEKLLGAKTEVVNYCTEAPFIQTLCPTLVLGPGSINQAHQPDEYLETRFIKPTRELITQVIHHFC
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Template Sequence  KLVTAYRN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QTHQKNEYITKKQLFNATSIYLEAIYSLC
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   395....400.. .......410.........420.........430.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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