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Job DescriptionP23908
Confidence100.00%DateThu Jan 5 11:40:32 GMT 2012
Rank4Aligned Residues379
% Identity20%Templatec2zogA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:cytosolic non-specific dipeptidase; PDBTitle: crystal structure of mouse carnosinase cn2 complexed with zn and2 bestatin
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50........ .60......... 70.
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Query Sequence  KNKLPPFIEIYRALIATPSISATEEALDQSNADLITLLADWFKDLGFNVEVQPVPGT. . . . . . . . RNKFNMLASIG. . QG
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Template Sequence  DENQDRYVKKLAEWVAIQSVSAW. PEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQKLPDGSEIPLPPILLGKLGSDPQ
Template Known Secondary structure  TS

BTT
.GGGTT




TTS






TT
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   12.......20.........30.... .....40.........50.........60.........70.........80.........90
 
   72.......80.........90 .........100.........110.........120.........130 .........140........
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Query Sequence  AGGLLLAGHTDTVPFDDGR. WTRDPFTLTEHDGKLYGLGTADMKGFFAFILDALRDVDVT. . KLKKPLYILATADEETSM
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Template Sequence  KKTVCIYGHLDVQPAALEDGWDSEPFTLVEREGKLYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLRFCLEGMEESGS
Template Known Secondary structure  S


B



GGGT
SS
TTS
TTSTTTTTTTT


SSS
GGGT
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   91........100.........110.........120.........130.........140.........150.........160.........170
 
   149150........ .160......... 170.........180.........190. ........ 200.........210......
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Query Sequence  AGARYFAETT. . . . ALRPDCAIIGE. . . . . PTSLQPVRAHKGHISNAIRIQG. . QSGHSSDP. ARGVNAIELMHDAIGHI
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Template Sequence  EGLDELIFAQKDKFFKDVDYVCISDNYWLGKNKPCITYGLRGICYFFIEVECSDKDLHSGVYGGSVHEAMTDLISLMGCL
Template Known Secondary structure  TTTTTTTTTT




B
SSSSS



SS
TTTS

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   171........180.........190.........200.........210.........220.........230.........240.........250
 
   217..220.........230... ......240....... ..250.
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Query Sequence  LQLRDNLKERYHYEAFT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VPYPTLNLGHIHGG. . . . DASN
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Template Sequence  VDKKGKILIPGINDAVAPVTDEEHALYDHIDFDMEEFAKDVGAETLLHSCKKDILMHRWRYPSLSLHGIEGAFSGSGAKT
Template Known Secondary structure  B
TTS
B
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TSS



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S
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SS

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   251........260.........270.........280.........290.........300.........310.........320.........330
 
   252.......260.........270.........280.........290...... ...300.........310.........320......
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Query Sequence  RICACCELHMDIRPLPGMTLNELNGLLNDALAPVSERWPGRLTVD. . . . . ELHPPIPGYECPPNHQLVEVVEKLLGAKTE
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Template Sequence  VIPRKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKVYMGHGGKPWVSDFNHPHYQAGRRALKTVFGVEPD
Template Known Secondary structure 
S
TT

TT


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   331........340.........350.........360.........370.........380.........390.........400.........410
 
   327.. 330......... 340.........350. ........360.........370.........380.
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Query Sequence  VVN. . . YCTEAPFIQT. . LCPTLVLGPGSI. NQAHQPDEYLETRFIKPTRELITQVIHHFC
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Template Sequence  LTREGGSIPVTLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRLNYIEGTKMLAAYLYEVS
Template Known Secondary structure  SS

T
S


B
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   411........420.........430.........440.........450.........460.........470.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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