Job Description P23908 Confidence 100.00% Date Thu Jan 5 11:40:32 GMT 2012 Rank 18 Aligned Residues 344 % Identity 15% Template c1ysjB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:protein yxep; PDBTitle: crystal structure of bacillus subtilis yxep protein (apc1829), a2 dinuclear metal binding peptidase from m20 family Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		K	N	K	L	P	P	F	I	E	I	Y	R	A	L	I	A	T	P	S	I	S	A	T	E	E	A	L	D	Q	S	N	A	D	L	I	T	L	L	A	D	W	F	K	D	L	G	F	N	V	E	V	Q	P	V	P	G	T	R	N	K	F	N	M	L	A	S	I	G	Q	G	A	.	.	G	G	L	L	L	A	G
Query Conservation																																																																									.	.
Alig confidence																										.	.	.	.	.	.	.																					.	.	.	.																	.	.
Template Conservation																										.	.	.	.	.	.	.																					.	.	.	.
Template Sequence		K	A	F	H	T	R	L	I	N	X	R	R	D	L	H	E	H	P	E	L	S	F	Q	E	.	.	.	.	.	.	.	V	E	T	T	K	K	I	R	R	W	L	E	E	E	Q	I	E	I	L	D	.	.	.	.	V	P	Q	L	K	T	G	V	I	A	E	I	K	G	R	E	D	G	P	V	I	A	I	R	A
Template Known Secondary structure																		S				T	T			.	.	.	.	.	.	.													T	T	T						.	.	.	.		T	T		S	S									S
Template Predicted Secondary structure																										.	.	.	.	.	.	.																					.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.								.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.					.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	D	T	V	P	F	D	D	G	R	W	T	R	D	P	F	T	L	T	E	H	D	G	K	L	Y	G	L	G	T	A	D	M	K	G	F	F	A	F	I	L	D	A	L	R	D	V	D	V	T	K	L	K	K	P	L	Y	I	L	A	T	A	D	E	E	T	S	M	A	G	A	R	Y	F	A	E	T	T	A
Query Conservation
Alig confidence											.	.									.																													.																											.
Template Conservation											.	.									.																													.																											.
Template Sequence		D	I	D	A	L	P	I	Q	E	.	.	Q	T	N	L	P	F	A	S	.	K	V	D	G	T	X	H	A	C	G	H	D	F	H	T	A	S	I	I	G	T	A	X	L	L	N	Q	R	.	R	A	E	L	K	G	T	V	R	F	I	F	Q	P	A	E	E	I	A	A	G	A	R	K	V	L	.	E	A	G	V
Template Known Secondary structure						B	S				.	.		S			T	T			.	S	S	T	T		B		T	T																	T	T		.	T	T	T											S		T	T	T	T								.		T	T	T
Template Predicted Secondary structure											.	.									.																													.																											.
Template SS confidence
		73	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	P	D	C	A	I	I	G	E	P	T	S	L	Q	P	V	R	A	H	K	G	H	I	S	N	A	I	R	I	Q	G	Q	S	G	H	S	S	D	P	A	R	G	V	N	A	I	E	L	M	H	D	A	I	G	H	I	L	Q	L	R	D	N	L	K	E	R	Y	H	Y	E	A	F	T	V	P	Y	P	T	L
Query Conservation
Alig confidence																								.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	N	G	V	S	A	I	F	G	X	H	N	K	P	D	L	P	V	G	T	I	G	.	V	K	E	G	P	L	X	A	S	V	D	R	F	E	I	V	I	K	G	K	I	D	P	I	A	A	A	G	Q	I	I	S	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	N	A	V	V
Template Known Secondary structure		T	T	T											T	T	S		T	T				.			S																														T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.																			.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	G	H	I	H	G	G	D	A	S	N	R	I	C	A	C	C	E	L	H	M	D	I	R	P	L	P	G	M	T	L	N	E	L	N	G	L	L	N	D	A	L	A	P	V	S	E	R	W	P	G	R	L	T	V	D	E	L	H	P	P	I	P	G	Y	E	C	P	P	N	H	Q	L	V	E	V	V	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	T	R	V	Q	A	G	T	S	W	N	V	I	P	D	Q	A	E	X	E	G	T	V	R	T	F	Q	K	E	A	R	Q	A	V	P	E	H	X	R	R	V	A	E	G	I	A	A	G	Y	G	A	Q	A	E	F	K	W	F	P	Y	L	P	S	V	Q	N	D	G	T	F	L	N	A	A	S	E	A	A	A
Template Known Secondary structure										S	S	S	S	S			S											S	S																						T	T																		G	G	G
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.				.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.			.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure										.	.	.																				.	.
Query SS confidence										.	.	.																				.	.
Query Sequence		L	L	G	A	K	T	E	V	.	.	.	V	N	Y	C	T	E	A	P	F	I	Q	T	L	C	P	T	L	V	L	.	.	G	P	G	S	I	N	Q	A	H	Q	P	D	E	Y	L	E	T	R	F	I	K	P	T	R	E	L	I	T	Q	V	I	H	H	F
Query Conservation										.	.	.																				.	.
Alig confidence										.	.	.																				.	.
Template Conservation
Template Sequence		R	L	G	Y	Q	T	V	H	A	E	Q	S	P	G	G	E	D	F	A	L	Y	Q	E	K	I	P	G	F	F	V	W	X	G	T	N	G	T	E	E	W	H	H	P	A	F	T	L	D	E	E	A	L	T	V	A	S	Q	Y	F	A	E	L	A	V	I	V
Template Known Secondary structure		T	T	T									B	S	S			T						T	T	S												S	S		T	T		T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions