Job Description P31825 Confidence 97.93% Date Wed Jan 25 15:20:49 GMT 2012 Rank 300 Aligned Residues 128 % Identity 16% Template c3lkzB_ PDB info PDB header:viral protein Chain: B: PDB Molecule:non-structural protein 5; PDBTitle: structural and functional analyses of a conserved hydrophobic pocket2 of flavivirus methyltransferase Resolution 2.00 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.							.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.
Query Sequence		P	V	A	G	V	K	R	C	L	D	I	G	A	G	S	G	L	L	A	L	M	L	A	Q	R	T	D	D	S	V	M	I	D	A	V	E	L	E	.	.	.	.	.	.	S	E	A	A	A	Q	A	Q	E	N	I	N	Q	S	P	W	A	E	R	I	N	V	H	T	A	D	I	Q	Q	W	I	T	Q	Q	T	V
Query Conservation																																								.	.	.	.	.	.
Alig confidence																													.											.	.	.	.	.	.					.	.	.	.	.	.	.																				.	.	.
Template Conservation																													.																					.	.	.	.	.	.	.																				.	.	.
Template Sequence		F	L	E	P	V	G	K	V	I	D	L	G	C	G	R	G	G	W	C	Y	Y	M	A	T	Q	K	R	.	V	Q	E	V	R	G	Y	T	K	G	G	P	G	H	E	E	P	Q	L	V	.	.	.	.	.	.	.	Q	S	Y	G	W	N	I	V	T	M	K	S	G	V	D	V	F	Y	R	.	.	.	P	S	E
Template Known Secondary structure		S											T		T	T								T	T		T	T	.											S	T	T	S							.	.	.	.	.	.	.		B	T	T	G	G	G						S			T	T	S	S	.	.	.
Template Predicted Secondary structure																													.																					.	.	.	.	.	.	.																				.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.								.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.		.	.				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.						.			.	.	.
Query SS confidence																																																		.						.			.	.	.
Query Sequence		R	F	D	L	I	I	S	N	P	P	Y	Y	Q	Q	G	V	E	C	S	T	P	Q	R	E	Q	A	R	Y	T	T	T	L	D	H	P	S	L	L	T	C	A	A	E	C	I	T	E	E	.	G	F	F	C	V	.	V	L	.	.	.	P	E	Q	I	G	N	G	F	T	E	L	A	L	S	M	G	W	H	L	R
Query Conservation																																																		.						.			.	.	.
Alig confidence														.													.	.	.	.	.	.	.	.	.	.														.						.			.	.	.
Template Conservation														.													.	.	.	.	.	.	.	.	.	.
Template Sequence		C	C	D	T	L	L	C	D	I	G	E	S	.	S	S	S	A	E	V	E	E	H	R	T	I	.	.	.	.	.	.	.	.	.	.	R	V	L	E	M	V	E	D	W	L	H	R	G	P	R	E	F	C	V	K	V	L	C	P	Y	M	P	K	V	I	E	K	M	E	L	L	Q	R	R	Y	G	G	G	L	V
Template Known Secondary structure				S										.		S											.	.	.	.	.	.	.	.	.	.											T	T										S		T	T	S
Template Predicted Secondary structure														.													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.											.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		190
Predicted Secondary structure
Query SS confidence
Query Sequence		L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		208

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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