Return to main results Retrieve Phyre Job Id

Job DescriptionP31825
Confidence99.77%DateWed Jan 25 15:20:49 GMT 2012
Rank81Aligned Residues163
% Identity14%Templatec3id5F_
PDB info PDB header:transferase/ribosomal protein/rnaChain: F: PDB Molecule:fibrillarin-like rrna/trna 2'-o-methyltransferase; PDBTitle: crystal structure of sulfolobus solfataricus c/d rnp assembled with2 nop5, fibrillarin, l7ae and a split half c/d rna
Resolution4.01 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30......... 40.........50.........60.........70.........80.........90.........100....
Predicted Secondary structure 



..


























Query SS confidence 












. .
































































Query Sequence  MKVGTDGILLGAW. . APVAGVKRCLDIGAGSGLLALMLAQRTDDSVMIDAVELESEAAAQAQENINQSPWAERINVHTAD
Query Conservation       
  

   ..     
 









  

 

 
      
 




   
  
  
    

   
      
Alig confidence 












..
































































Template Conservation   



 
     
       
  




 
 
     

  

  
 
 


 
      
        

  
  
   
Template Sequence  FRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARF
Template Known Secondary structure  TT
TT
S




TT

T
TTS
TTS



TT

TT
Template Predicted Secondary structure 

























Template SS confidence 















































































   57..60.........70.........80.........90.........100.........110.........120.........130......
 
   105....110.........120.........130.........140.........150.........160.........170. .......
Predicted Secondary structure 




































......
Query SS confidence 


































































. . . . . .






Query Sequence  IQQWITQQTVRFDLIISNPPYYQQGVECSTPQREQARYTTTLDHPSLLTCAAECITEEGFFCVVLPE. . . . . . QIGNGFT
Query Conservation              
    



              
           
      




    
   ......       
Alig confidence 







.















...................






















......






Template Conservation          .   
 
          ...................   
    
 




 


   
      
      
Template Sequence  PQSYKSVV. ENVDVLYVDIAQPDQT. . . . . . . . . . . . . . . . . . . DIAIYNAKFFLKVNGDMLLVIKAVTKDPKEIYKTEV
Template Known Secondary structure  GGGTTTT
.



S
TT...................




SSSSSTT
Template Predicted Secondary structure 




.





...................










Template SS confidence 















































































   137..140.... .....150.........160 .........170.........180.........190......
 
   179180.........190.........200.........
Predicted Secondary structure 









Query SS confidence 






























Query Sequence  ELALSMGWHLRLRTDVAENEARLPHRVLLAF
Query Conservation        
        
           

  
Alig confidence 






























Template Conservation    

  

   
 
 
 

   
  
   
 
Template Sequence  EKLENSNFETIQIINLDPYDKDHAIVLSKYK
Template Known Secondary structure  TTT
TTTSSS

Template Predicted Secondary structure 











Template SS confidence 






























   201........210.........220.........230.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions