Job Description P31825 Confidence 97.92% Date Wed Jan 25 15:20:49 GMT 2012 Rank 302 Aligned Residues 123 % Identity 19% Template c3evaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rna-directed rna polymerase ns5; PDBTitle: crystal structure of yellow fever virus methyltransferase complexed2 with s-adenosyl-l-homocysteine Resolution 1.50 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.							.	.	.	.	.	.	100	.	.	.	.	.	.						.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.														.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.														.	.	.	.	.
Query Sequence		P	V	A	G	V	K	R	C	L	D	I	G	A	G	S	G	L	L	A	L	M	L	A	Q	R	T	D	D	S	V	M	I	D	A	V	E	L	E	S	E	A	A	A	Q	A	Q	E	N	I	N	Q	S	P	.	.	.	.	.	.	W	A	E	R	I	N	V	H	T	A	D	I	Q	.	.	.	.	.	Q	W	I
Query Conservation																																																							.	.	.	.	.	.														.	.	.	.	.
Alig confidence																												.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.														.	.	.	.	.
Template Conservation																												.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	V	K	L	E	G	R	V	I	D	L	G	C	G	R	G	G	W	C	Y	Y	A	A	A	Q	K	.	E	V	S	G	V	K	G	F	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	D	G	H	E	K	P	M	N	V	Q	S	L	G	W	N	I	I	T	F	K	D	K	T	D	I	H
Template Known Secondary structure		S	S										T		T	T									T	S	T	.	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T									B	T	T	G	G	G						S			T	T
Template Predicted Secondary structure																												.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.																.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.		.	.				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																																																				.									.			.	.	.
Query SS confidence																																																				.									.			.	.	.
Query Sequence		T	Q	Q	T	V	R	F	D	L	I	I	S	N	P	P	Y	Y	Q	Q	G	V	E	C	S	T	P	Q	R	E	Q	A	R	Y	T	T	T	L	D	H	P	S	L	L	T	C	A	A	E	C	I	.	T	E	E	G	F	F	C	V	.	V	L	.	.	.	P	E	Q	I	G	N	G	F	T	E	L	A	L	S	M
Query Conservation																																																				.									.			.	.	.
Alig confidence															.	.	.	.	.															.	.	.	.	.	.													.									.			.	.	.
Template Conservation															.	.	.	.	.															.	.	.	.	.	.
Template Sequence		R	L	E	P	V	K	C	D	T	L	L	C	D	.	.	.	.	.	I	G	E	S	S	S	S	S	V	T	E	G	E	R	.	.	.	.	.	.	T	V	R	V	L	D	T	V	E	K	W	L	A	C	G	V	D	N	F	C	V	K	V	L	A	P	Y	M	P	D	V	L	E	K	L	E	L	L	Q	R	R	F
Template Known Secondary structure		S	S						S						.	.	.	.	.						S									.	.	.	.	.	.													T	T			S							S		T	T	S
Template Predicted Secondary structure															.	.	.	.	.															.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.						.	.	.	150	.	.	.	.	.	.	.	.	.	160							.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		185	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		G	W	H	L	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	T	V	I	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions