Job Description P31825 Confidence 99.45% Date Wed Jan 25 15:20:49 GMT 2012 Rank 241 Aligned Residues 199 % Identity 14% Template c3bwbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution Resolution 2.50 Å

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		3	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.							.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure											.																						.	.	.	.	.	.
Query SS confidence											.																						.	.	.	.	.	.
Query Sequence		Q	S	T	S	V	L	R	R	N	.	G	F	T	F	K	Q	F	F	V	A	H	D	R	C	A	M	K	V	G	T	D	.	.	.	.	.	.	G	I	L	L	G	A	W	A	P	V	A	G	V	K	R	C	L	D	I	G	A	G	S	G	L	L	A	L	M	L	A	Q	R	T	D	D	S	V	M	I	D	A	V
Query Conservation											.																						.	.	.	.	.	.
Alig confidence											.							.															.	.	.	.	.	.																																		.
Template Conservation																		.																																																						.
Template Sequence		Q	H	L	T	I	F	E	S	D	P	K	G	P	W	G	T	.	V	X	A	L	D	G	C	I	Q	V	T	D	Y	D	E	F	V	Y	H	E	V	L	G	H	T	S	L	C	S	H	P	K	P	E	R	V	L	I	I	G	G	G	D	G	G	V	L	R	E	V	L	R	H	.	G	T	V	E	H	C	D	L	V
Template Known Secondary structure		S									T	T	S	S				.					T	T						T	T	T														T	T	S	S											T	T	S							T	T		.	T	T
Template Predicted Secondary structure																		.																																																						.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																				.	.	.																				.
Query SS confidence																				.	.	.																				.
Query Sequence		E	L	E	S	E	A	A	A	Q	A	Q	E	N	I	N	Q	S	P	.	.	.	W	A	E	R	I	N	V	H	T	A	D	I	Q	Q	W	I	T	Q	Q	.	T	V	R	F	D	L	I	I	S	N	P	P	Y	Y	Q	Q	G	V	E	C	S	T	P	Q	R	E	Q	A	R	Y	T	T	T	L	D	H	P	S	L
Query Conservation																				.	.	.																				.
Alig confidence																				.	.	.																				.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	I	D	G	E	V	X	E	Q	S	K	Q	H	F	P	Q	I	S	R	S	L	A	D	P	R	A	T	V	R	V	G	D	G	L	A	F	V	R	Q	T	P	D	N	T	Y	D	V	V	I	I	D	T	T	D	P	A	S	K	L	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	F
Template Known Secondary structure			S																	G	G	G	G		T	T						S								T	S		T	T										S						S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.																	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.						170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.																		.
Query SS confidence																				.	.	.	.	.																		.
Query Sequence		L	T	C	A	A	E	C	I	T	E	E	G	F	F	C	V	V	L	.	.	.	.	.	P	E	Q	I	G	N	G	F	T	E	L	A	L	S	M	G	W	.	H	L	R	L	R	T	D	V	A	E	N	E	A	R	L	P	H	R	V	L	L	A	F	S	P	Q	A	G	E	C	F	S	D
Query Conservation																				.	.	.	.	.																		.
Alig confidence																				.	.	.	.	.																		.
Template Conservation
Template Sequence		Y	K	D	V	L	R	I	L	K	P	D	G	I	C	C	N	Q	G	E	S	I	W	L	D	L	E	L	I	E	K	X	S	R	F	I	R	E	T	G	F	A	S	V	Q	Y	A	L	X	H	V	P	T	Y	P	C	G	S	I	G	T	L	V	C	S	K	K	A	G	V	D	V	T	K	P
Template Known Secondary structure																						T	T	T																T		S										T	T	S	T	T	S									S	S	T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions