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Job DescriptionP31825
Confidence99.30%DateWed Jan 25 15:20:49 GMT 2012
Rank261Aligned Residues173
% Identity16%Templatec3adnB_
PDB info PDB header:transferaseChain: B: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of spermidine synthase from e. coli.
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.........60.........70.........80.........90.........100.........110
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Query Sequence  TDGILLGAWAPVAGVKRCLDIGAGSGLLALMLAQRTDDSVMIDAVELESEAAAQAQENINQSPWAERINVHTADIQQWIT
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Template Sequence  HEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRH. KNVESITMVEIDAGVVSFCRQYLPNHN. . AGSYDDPRFKLVIVN
Template Known Secondary structure  SS


S

SSTT
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S
S..TT
TT
TT


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   64.....70.........80.........90........ .100.........110.........120..... ....130.........140
 
   111........120.........130.........140.........150.........160......... 170.........180.....
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Query Sequence  QQTVRFDLIISNPPYYQQGVECSTPQREQARYTTTLDHPSLLTCAAECITEEGFFCVVL. . . . . PEQIGNGFTELALSMG
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Template Sequence  QTSQTFDVIISDCT. . . . . . . . . . . . . . . . . . . . . . . . SAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYF
Template Known Secondary structure 
TT




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SS

TT
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   147..150.........160 .........170.........180.........190.........200..
 
   186...190.........200.........210.........220.........230
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Query Sequence  WHLRLRTDVAENEARLPHRVLLAFSPQAGECFSDRLVIRGPDQNY
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Template Sequence  SDVGFYQAAIPTYYGGIMTFAWATDNDALRHLSTEIIQARLKCRY
Template Known Secondary structure  S
TTSSSSS
TTTT

TT




SS
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   214.....220.........230.........240.........250........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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