Job Description P69228 Confidence 83.80% Date Thu Jan 5 12:11:20 GMT 2012 Rank 178 Aligned Residues 123 % Identity 11% Template c2q5cA_ PDB info PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum Resolution 1.49 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.																		60	.	.	.	.
Predicted Secondary structure																																				.															.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.															.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	I	D	E	N	T	P	R	I	L	I	V	E	D	E	P	K	L	G	Q	L	L	I	D	Y	L	R	A	A	S	Y	A	P	T	.	L	I	S	H	G	D	Q	V	L	P	Y	V	R	Q	.	.	T	P	P	D	L	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	L	M	L
Query Conservation																																				.															.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.																														.															.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.
Template Sequence		S	L	.	.	.	S	L	K	I	A	L	I	S	Q	N	E	N	L	L	N	L	F	P	K	L	A	L	E	K	N	F	I	P	I	T	K	T	A	S	L	T	R	A	S	K	I	A	F	G	L	Q	D	E	V	D	A	I	I	S	R	G	A	T	S	D	Y	I	K	K	S	V	S	I	P	S	I	S	I	K	V
Template Known Secondary structure				.	.	.									S																T																					T	T	T		S														T	T		S	S
Template Predicted Secondary structure				.	.	.
Template SS confidence
		0	.				.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	T	D	G	L	T	L	C	R	E	I	R	R	F	S	D	I	P	I	V	M	V	T	A	K	I	E	E	I	D	R	L	L	G	L	E	I	G	A	D	D	Y	I	C	K	P	Y	S	P	R	E	V	V	A	R	V	K	T	I	L	R	R	C	K	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	R	F	D	T	M	R	A	V	Y	N	A	K	R	F	G	N	E	L	A	L	I	A	Y	K	H	S	I	V	D	K	H	E	I	E	A	M	L	G	V	K	I	K	E	F	L	F	S	S	E	D	E	I	T	T	L	I	S	K	V	K	T	E	N	I	K
Template Known Secondary structure														G	G	G		S								S	S		S	S										T										S	G	G	G											T	T
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions