Return to main results Retrieve Phyre Job Id

Job DescriptionP69228
Confidence99.90%DateThu Jan 5 12:11:20 GMT 2012
Rank12Aligned Residues120
% Identity38%Templatec1w25B_
PDB info PDB header:signaling proteinChain: B: PDB Molecule:stalked-cell differentiation controlling protein; PDBTitle: response regulator pled in complex with c-digmp
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   10.........20.........30.........40.........50.........60.........70......... 80......
Predicted Secondary structure 
































...






Query SS confidence 





































































. . .






Query Sequence  TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRF. . . SDIPIVM
Query Conservation    







      
   
   
  
  
    


        





  

   
       
  ...     
 
Alig confidence 





































































...






Template Conservation 
 






       
   
   
  
  
    


        



 
  

  

      

        


 
Template Sequence  SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVL
Template Known Secondary structure 


SSTTTT
SS

SS

SSS
STTTTTS
Template Predicted Secondary structure 




























Template SS confidence 















































































   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   87..90.........100.........110.........120.........
Predicted Secondary structure 
























Query SS confidence 










































Query Sequence  VTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK
Query Conservation 
               
  
 
 

     
   
        
Alig confidence 










































Template Conservation 

          
   
   

 

     
   
        
Template Sequence  ITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKL
Template Known Secondary structure 
SS
T

SS

Template Predicted Secondary structure 




























Template SS confidence 










































   82.......90.........100.........110.........120....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions