Job Description P69228 Confidence 99.88% Date Thu Jan 5 12:11:20 GMT 2012 Rank 28 Aligned Residues 180 % Identity 18% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		P	R	I	L	I	V	E	D	E	P	K	L	G	Q	L	L	I	D	Y	L	R	A	A	S	Y	A	P	T	L	I	S	H	G	D	Q	V	L	P	Y	V	R	Q	T	P	P	D	L	I	L	L	D	L	M	L	P	G	T	D	G	L	T	L	C	R	E	I	R	R	F	S	.	D	I	P	I	V	M	V	T	A
Query Conservation																																																																								.
Alig confidence																																																																								.
Template Conservation
Template Sequence		M	N	V	L	V	I	E	D	D	K	V	F	R	G	L	L	E	E	Y	L	S	M	K	G	I	K	V	E	S	A	E	R	G	K	E	A	Y	K	L	L	S	E	K	H	F	N	V	V	L	L	D	L	L	L	P	D	V	N	G	L	E	I	L	K	W	I	K	E	R	S	P	E	T	E	V	I	V	I	T	G
Template Known Secondary structure																									T							S	S											S			S						S	B		S	S	S	B													T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	E	E	I	D	R	L	L	G	L	E	I	G	A	D	D	Y	I	C	K	P	Y	S	P	R	E	V	V	A	R	V	K	T	I	L	R	R	C	K	P	Q	R	E	L	Q	Q	Q	D	A	E	S	P	L	I	I	D	E	G	R	F	Q	A	S	W	R	G	K	M	L	D	L	T	P	A	E	F	R	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	G	T	I	K	T	A	V	E	A	M	K	M	G	A	Y	D	F	L	T	K	P	C	M	L	E	E	I	E	L	T	I	N	K	A	I	E	H	R	K	L	R	K	E	N	E	L	L	R	R	E	K	D	L	K	E	E	E	Y	V	F	E	S	P	K	M	K	E	I	L	E	K	I	K	K	I	S	C	A	E
Template Known Secondary structure		T	T										T	T	T								S																																T	T								S														T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	L	S	H	E	P	G	K	V	F	S	R	E	Q	L	L	N	H	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	P	V	L	I	T	G	E	S	G	V	G	K	E	V	V	A	R	L	I	H
Template Known Secondary structure		S							S	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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