Job Description P39298 Confidence 99.96% Date Thu Jan 5 11:59:04 GMT 2012 Rank 31 Aligned Residues 229 % Identity 14% Template c3mveB_ PDB info PDB header:lyase Chain: B: PDB Molecule:upf0255 protein vv1_0328; PDBTitle: crystal structure of a novel pyruvate decarboxylase Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		I	E	I	E	S	R	E	L	A	D	I	P	V	L	H	A	Y	P	V	G	Q	K	D	T	P	L	P	C	V	I	F	Y	H	G	F	T	S	S	S	.	L	V	Y	S	Y	F	A	V	A	L	A	Q	A	G	L	R	V	I	M	P	D	A	P	D	H	G	S	R	F	S	G	D	A	A	R	R	L	N	Q	F
Query Conservation																																									.
Alig confidence										.												.	.																		.																																							.	.
Template Conservation										.												.	.																																																									.	.
Template Sequence		L	E	I	P	F	E	K	G	.	K	I	T	A	H	L	H	L	T	N	T	.	.	D	K	P	H	P	V	V	I	V	S	A	G	L	D	S	L	Q	T	D	M	W	R	L	F	R	D	H	L	A	K	H	D	I	A	M	L	T	V	D	M	P	S	V	G	Y	S	S	K	Y	P	L	T	E	D	Y	S	.	.
Template Known Secondary structure							T	T		.									S		S	.	.	S	S											T	T	S		G	G	G							T	T	G	G	G	G	T									T	T	S	G	G	G	T	T	S				S		T	T	.	.
Template Predicted Secondary structure										.												.	.																																																									.	.
Template SS confidence
		171	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.													.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	Q	I	L	L	Q	S	M	Q	E	F	T	T	L	R	A	A	I	A	E	E	N	W	L	L	D	D	R	L	A	V	G	G	A	S	M	G	A	M	T	A	L	G	I	T	A	R	H	P	T	V	R	C	T	A	S	M	M	G	S	G	Y	F	T	S	L	.	.	.	.	.	.	.	.	.	.	.	.	A	R
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	R	L	H	Q	A	V	L	N	E	L	F	S	I	P	Y	V	D	H	H	R	V	G	L	I	G	F	R	F	G	G	N	A	M	V	R	L	S	F	L	E	Q	E	K	I	K	A	C	V	I	L	G	A	P	I	H	D	I	F	A	S	P	Q	K	L	Q	Q	M	P	K	M	Y	L
Template Known Secondary structure		.	.	.	.	.	.	.	.										G	G	G		T	T												T													T	G	G	G								S				S										T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	F	P	P	L	I	P	E	T	A	A	Q	Q	N	E	F	N	N	I	V	A	P	L	A	E	W	E	A	T	N	H	L	E	Q	L	S	D	R	P	L	L	L	W	H	G	L	D	D	D	V	V	P	A	D	E	S	L	R	L	Q	Q	A	L	S	E	T	G	R	D	K	L	L	T	C	S	W	Q	P	G
Query Conservation
Alig confidence																																																																					.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.
Template Sequence		D	V	L	A	S	R	L	G	K	S	V	V	D	I	Y	S	L	S	G	Q	M	A	A	W	S	L	K	V	Q	G	F	L	S	S	R	K	T	K	V	P	I	L	A	M	S	L	E	G	D	P	V	S	P	Y	S	D	N	Q	M	V	A	F	F	S	T	Y	G	.	.	.	.	.	.	K	A	K	K	I	S	S
Template Known Secondary structure								T	T		S											G	G	G	G		T	T	T	T	T	T	T	T	S	S		B	S	S								T	T		S	S	S											T	B	T	T		.	.	.	.	.	.							S
Template Predicted Secondary structure																																																																					.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.							.	.	.	.	.	390	.
		229	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		V	R	H	R	I	T	.	P	E	A	L	D	A	A	V	T	F	F	R	Q	H	L
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		K	T	I	T	Q	G	Y	E	Q	S	L	D	L	A	I	K	W	L	E	D	E	L
Template Known Secondary structure		S		S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions