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Job DescriptionP39298
Confidence100.00%DateThu Jan 5 11:59:04 GMT 2012
Rank10Aligned Residues243
% Identity14%Templatec3iumA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:prolyl endopeptidase; PDBTitle: appep_wtx opened state
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20. ........30.........40.. .......50.........60.........70........
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Query Sequence  IEIESRELADIPVLHAYPVG. QKDTPLPCVIFYHGFTSSSLV. . YSYFAVALAQAGLRVIMPDAPDHGSRFSGDAARRLN
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Template Sequence  RFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQ
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   425....430.........440.........450.........460.........470.........480.........490.........500....
 
   7980.........90.........100.........110.........120......... 130.........140.........150.......
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Query Sequence  QFWQILLQSMQEFTTLRAAIAEENWLLDDRLAVGGASMGAMTALGITARHP. TVRCTASMMGSGYFTSLARSLFPPLIPE
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Template Sequence  QN. . . KQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXRVALPAVGVLDXLRYHTFTAGTGWAY
Template Known Secondary structure  GG...TTS

GGGT
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GGGSTTSGGGGG
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   505. ...510.........520.........530.........540.........550.........560.........570.........580.
 
   158.160.........170.........180...... ...190.........200.........210........ .220.........230.....
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Query Sequence  TAAQQNEFNNIVAPLAEWEATNHLEQLSD. RPLLLWHGLDDDVVPADESLRLQQALSETGRD. KLLTCSWQPGVRHRITP
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Template Sequence  DYGTSADSEAXFDYLKGYSPLHNVRPGVSYPSTXVTTADHDDRVVPAHSFKFAATLQADNAGPHPQLIRIETPVAKL. . I
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   582.......590.........600.........610.........620.........630.........640.........650........ .
 
   236...240.........
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Query Sequence  EALDAAVTFFRQHL
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Template Sequence  EQSADIYAFTLYEX
Template Known Secondary structure  T
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   668.670.........680.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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