Job Description P39298 Confidence 99.92% Date Thu Jan 5 11:59:04 GMT 2012 Rank 63 Aligned Residues 221 % Identity 15% Template c3h04A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein with unknown function from2 staphylococcus aureus subsp. aureus mu50 Resolution 1.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		E	I	E	S	R	E	L	A	D	I	P	V	L	H	A	Y	P	V	G	Q	K	D	T	P	L	P	C	V	I	F	Y	H	G	F	T	.	.	.	S	S	S	L	V	Y	S	Y	F	A	V	A	L	A	Q	A	G	L	R	V	I	M	P	D	A	P	D	H	G	S	R	F	S	G	D	A	A	R	R	L	N	Q
Query Conservation																																					.	.	.
Alig confidence																										.	.										.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.																																												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	I	T	K	D	A	F	A	L	P	Y	T	I	I	K	A	K	N	Q	P	T	K	G	.	.	V	I	V	Y	I	H	G	G	G	L	M	F	G	K	A	N	D	L	S	P	Q	Y	I	D	I	L	T	E	H	Y	D	L	I	Q	L	S	Y	R	L	L	P	E	V	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T	S											S	S	S	S		S		.	.								S	T	T	T	S			T	T		S									T	T	T											T	T	T	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.																																												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	W	Q	I	L	L	Q	S	M	Q	E	F	T	T	L	R	A	A	I	A	E	E	N	W	L	L	D	D	R	L	A	V	G	G	A	S	M	G	A	M	T	A	L	G	I	T	A	R	H	P	T	V	R	C	T	A	S	M	M	G	S	G	Y	F	T	S	L	A	R	S	L	F	P	P	L	I	P	E	T	A
Query Conservation
Alig confidence		.	.	.																							.	.
Template Conservation		.	.	.																							.	.
Template Sequence		.	.	.	S	L	D	C	I	I	E	D	V	Y	A	S	F	D	A	I	Q	S	Q	Y	S	N	.	.	C	P	I	F	T	F	G	R	S	S	G	A	Y	L	S	L	L	I	A	R	D	R	D	I	D	G	V	I	D	F	Y	G	Y	S	R	I	N	T	E	P	F	K	T	T	N	S	Y	Y	A	K	I	A	Q
Template Known Secondary structure		.	.	.																			T	T	T	T	.	.	S								T													S			S						S			S		S		S					S										T
Template Predicted Secondary structure		.	.	.																							.	.
Template SS confidence
					74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
																																				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	Q	N	E	F	N	N	I	V	A	P	L	A	E	W	E	A	T	N	H	L	E	Q	L	S	D	R	P	L	L	L	W	H	G	L	D	D	D	V	V	P	A	D	E	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	I	N	E	T	M	I	A	Q	L	T	S	P	T	P	V	V	Q	D	Q	I	A	Q	R	F	L	I	Y	V	Y	A	R	G	T	G	K	W	I	N	M	I	N	I	A	D	Y	T	D	S	K	Y	N	I	A	P	D	E	L	K	T	L	P	P	V	F	I	A	H	C	N	G	D	Y	D	V	P	V	E	E	S
Template Known Secondary structure		T	S							T	T	S		S	S			S	S		S	S	G	G	G											T									S		T	T	S	G	G	G	S							T	T										T	T		S	S	S		T
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.								.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.
Query Sequence		L	R	L	Q	Q	A	L	S	E	T	G	R	D	K	L	L	T	C	S	W	Q	P	G	V	R	H	R	I	T	.	.	.	.	.	.	.	P	E	A	L	D	A	A	V	T	F	F	R	Q
Query Conservation																															.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.
Template Sequence		E	H	I	M	N	H	V	P	H	S	.	.	.	.	.	.	T	F	E	R	V	N	K	N	E	H	D	F	D	R	R	P	N	D	E	A	I	T	I	Y	R	K	V	V	D	F	L	N	A
Template Known Secondary structure						T	T		S	S		.	.	.	.	.	.							S	S		S		T	T	S	S
Template Predicted Secondary structure												.	.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.							.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions