Job Description P39298 Confidence 99.91% Date Thu Jan 5 11:59:04 GMT 2012 Rank 72 Aligned Residues 226 % Identity 14% Template c2zshA_ PDB info PDB header:hormone receptor Chain: A: PDB Molecule:probable gibberellin receptor gid1l1; PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.																.	.	.	.	.	.	30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																.
Query Sequence		E	I	E	S	R	E	L	A	D	I	P	V	L	H	A	Y	P	V	G	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	P	L	P	C	V	I	F	Y	H	G	F	T	S	.	.	.	.	.	S	S	L	V	Y	S	Y	F	A	V	A	L	A	Q	A	.	G	L	R	V	I	M	P	D
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																.
Template Conservation
Template Sequence		D	V	L	I	D	R	R	I	N	L	L	S	R	V	Y	R	P	A	Y	A	D	Q	E	Q	P	P	S	I	L	D	L	E	K	P	V	D	G	D	I	V	P	V	I	L	F	F	H	G	G	S	F	A	H	S	S	A	N	S	A	I	Y	D	T	L	C	R	R	L	V	G	L	C	K	C	V	V	V	S	V	N
Template Known Secondary structure							T	T	T	T											T	T		S	S				T	T	S	T	T					S	S	S										S	T	T	T	S			T	T	B															T	S
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.						.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.
Predicted Secondary structure																																										.	.	.	.	.																														.	.	.	.
Query SS confidence																																										.	.	.	.	.																														.	.	.	.
Query Sequence		A	P	D	H	G	S	R	F	S	G	D	A	A	R	R	L	N	Q	F	W	Q	I	L	L	Q	S	M	Q	E	F	T	T	L	R	A	A	I	A	E	E	.	.	.	.	.	N	W	L	L	D	D	R	L	A	V	G	G	A	S	M	G	A	M	T	A	L	G	I	T	A	R	H	P	T	.	.	.	.	V	R
Query Conservation																																										.	.	.	.	.																														.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																														.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	R	R	A	P	E	N	P	Y	P	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	D	D	G	W	I	A	L	N	W	V	N	S	R	S	W	L	K	S	K	K	D	S	K	V	H	I	F	L	A	G	D	S	S	G	G	N	I	A	H	N	V	A	L	R	A	G	E	S	G	I	D	V	L
Template Known Secondary structure					T	T	T	S		T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.														T		G	G	G			T	T	T	S	S									T															T	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.															.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.													.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	T	A	S	M	M	G	S	G	Y	F	T	S	L	A	R	S	L	F	P	.	.	.	.	.	.	.	.	.	.	.	.	P	L	I	P	E	T	A	A	Q	Q	N	E	F	N	N	I	V	A	P	L	A	E	W	E	A	T	N	H	L	E	Q	L	S	D	R	P	L	L	L	W	H	G	L	D	D	D	V	V
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	N	I	L	L	N	P	M	F	G	G	N	E	R	T	E	S	E	K	S	L	D	G	K	Y	F	V	T	V	R	D	R	D	W	Y	W	K	A	F	L	P	E	G	E	D	R	E	H	P	A	C	N	P	F	S	P	R	G	K	S	L	E	G	V	S	F	P	K	S	L	V	V	V	A	G	L	D	L	I	R
Template Known Secondary structure							S						S	S									T	T	T	S	S														S		T	T			T	T	S	T	T	T		T	T	S	T	T	S				T	T												T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.									.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.
Query Sequence		P	A	D	E	S	L	R	L	Q	Q	A	L	S	E	T	G	R	D	K	L	L	T	C	S	W	Q	P	G	V	R	H	R	I	T	.	.	.	.	.	.	.	.	P	E	A	L	D	A	A	V	T	F	F	R
Query Conservation																																				.	.	.	.	.	.	.	.
Alig confidence			.	.																.	.															.	.	.	.	.	.	.	.
Template Conservation			.	.																.	.
Template Sequence		D	.	.	W	Q	L	A	Y	A	E	G	L	K	K	A	G	Q	E	.	.	V	K	L	M	H	L	E	K	A	T	V	G	F	Y	L	L	P	N	N	N	H	F	H	N	V	M	D	E	I	S	A	F	V	N
Template Known Secondary structure			.	.												T	T			.	.							T	T			T	T	T	T	S	S	S		S
Template Predicted Secondary structure			.	.																.	.
Template SS confidence
		293			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions