Job Description P39298 Confidence 99.75% Date Thu Jan 5 11:59:04 GMT 2012 Rank 164 Aligned Residues 171 % Identity 18% Template c2qs9A_ PDB info PDB header:structural protein Chain: A: PDB Molecule:retinoblastoma-binding protein 9; PDBTitle: crystal structure of the human retinoblastoma-binding2 protein 9 (rbbp-9). nesg target hr2978 Resolution 1.72 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		28	.		30	.	.	.	.	.	.	.	.	.	40	.	.					.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure				.														.	.	.	.												.
Query SS confidence				.														.	.	.	.												.
Query Sequence		P	C	.	V	I	F	Y	H	G	F	T	S	S	S	L	V	.	.	.	.	Y	S	Y	F	A	V	A	L	A	Q	A	.	G	L	R	V	I	M	P	D	A	P	D	H	G	S	R	F	S	G	D	A	A	R	R	L	N	Q	F	W	Q	I	L	L	Q	S	M	Q	E	F	T	T	L	R	A	A	I	A	E	E
Query Conservation				.														.	.	.	.												.
Alig confidence				.														.	.	.	.												.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	S	K	A	V	I	V	P	G	N	G	G	G	D	V	T	T	H	G	W	Y	G	W	V	K	K	E	L	E	K	I	P	G	F	Q	C	L	A	K	N	X	P	D	P	I	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	S	I	W	L	P	F	X	E	T	E
Template Known Secondary structure											S	S	S	S		T	T	T	S	T	T									T	T	S	T	T									S	S	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50																						.	.	.	.	.	.	.	.	.	60	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	W	L	L	D	D	R	L	A	V	G	G	A	S	M	G	A	M	T	A	L	G	I	T	A	R	H	P	T	V	R	C	T	A	S	M	M	G	S	G	Y	F	T	S	L	A	R	S	L	F	P	P	L	I	P	E	T	A	A	Q	Q	N	E	F	N	N	I	V	A	P	L	A	E	W	E	A	T	N	H	L
Query Conservation
Alig confidence						.																								.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.																								.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	H	C	D	.	E	K	T	I	I	I	G	H	S	S	G	A	I	A	A	X	R	Y	A	E	T	H	R	.	V	Y	A	I	V	L	V	S	A	Y	T	S	D	L	G	D	E	N	E	R	A	S	G	Y	F	T	R	P	W	Q	W	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K
Template Known Secondary structure		S				.	T	T							T													S		.		S						S			S	S		T	T							T	S	T	T	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.																								.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		63	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.																			.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		E	Q	L	S	D	R	P	L	L	L	W	H	G	L	D	D	D	V	V	P	A	D	E	S	L	R	L	Q	Q	A	L	S	E	T	G	R	D	K	L	L	T	C	S	W	Q	P	G	V	R	H	R	I	T	.	.	.	P	E	A	L	D	A	A	V	T	F	F	R
Query Conservation																																																							.	.	.
Alig confidence																																			.	.	.	.	.	.	.														.	.	.
Template Conservation																																			.	.	.	.	.	.	.
Template Sequence		I	K	A	N	C	P	Y	I	V	Q	F	G	S	T	D	D	P	F	L	P	W	K	E	Q	Q	E	V	A	D	R	L	E	T	.	.	.	.	.	.	.	K	L	H	K	F	T	D	C	G	H	F	Q	N	T	E	F	H	E	L	I	T	V	V	K	S	L	L	K
Template Known Secondary structure							S								T	T		S	S	S													T		.	.	.	.	.	.	.						S	S		T	T	S		S	S														T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.								.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions