Job Description P16679 Confidence 98.58% Date Thu Jan 5 11:35:24 GMT 2012 Rank 85 Aligned Residues 135 % Identity 16% Template c2o8bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna mismatch repair protein msh2; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g t mispair Resolution 2.75 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.										.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.
Query Sequence		I	N	V	Q	N	V	S	K	T	F	I	L	H	Q	Q	N	G	V	R	L	P	V	L	N	R	A	S	L	T	V	N	A	G	E	C	V	V	L	H	G	H	S	G	S	G	K	S	T	L	L	R	.	.	.	.	.	.	.	.	.	S	L	Y	A	N	Y	L	P	D	E	G	Q	I	Q	I	K	H	G	D	E
Query Conservation																																																					.	.	.	.	.	.	.	.	.
Alig confidence										.	.																																										.	.	.	.	.	.	.	.	.
Template Conservation										.	.
Template Sequence		I	I	L	K	A	S	R	H	.	.	A	C	V	E	V	Q	D	E	I	A	F	I	P	N	D	V	Y	F	E	K	D	K	Q	M	F	H	I	I	T	G	P	N	M	G	G	K	S	T	Y	I	R	Q	T	G	V	I	V	L	M	A	Q	I	G	C	F	V	P	C	E	S	A	E	V	S	I	V	D	C	I	L
Template Known Secondary structure										.	.	T	T	T	T	T	S	T	T												T	T	S	S								S	T	T	S	S																	T	T			B	S	S	S								S
Template Predicted Secondary structure										.	.
Template SS confidence
		632	.	.	.	.	.	.	.			640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	V	D	L	V	T	A	P	A	R	K	V	V	E	I	R	K	T	T	V	G	W	V	S	Q	F	L	R	V	I	P	R	I	S	A	L	E	V	V	M	Q	P	L	L	D	T	G	V	P	R	E	A	C	A	A	K	A	A	R	L	L	T	R	L	N	V	P	E	R	L	W	H	L	A	P	S	T	F	S	G
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	R	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	M	A
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		710	.	.	.																																																																								.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																						.											.
Query SS confidence																																						.											.
Query Sequence		G	E	Q	Q	R	V	N	I	A	R	G	F	I	V	D	Y	P	I	L	L	L	D	E	P	T	A	S	L	D	A	K	N	S	A	A	V	.	V	E	L	I	R	E	A	K	T	R	.	G	A	A	I	V	G	I	F	H	D	E	A
Query Conservation																																						.											.
Alig confidence													.																									.											.
Template Conservation													.
Template Sequence		E	M	L	E	T	A	S	I	L	R	S	.	A	T	K	D	S	L	I	I	I	D	E	L	G	R	G	T	S	T	Y	D	G	F	G	L	A	W	A	I	S	E	Y	I	A	T	K	I	G	A	F	C	M	F	A	T	H	F	H	E
Template Known Secondary structure											T	T	.			T	T	S						S				S	S																			T	T											T	T
Template Predicted Secondary structure													.
Template SS confidence
		728	.	730	.	.	.	.	.	.	.	.		.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions