Return to main results Retrieve Phyre Job Id

Job DescriptionP16679
Confidence100.00%DateThu Jan 5 11:35:24 GMT 2012
Rank14Aligned Residues213
% Identity26%Templatec2d62A_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:multiple sugar-binding transport atp-binding PDBTitle: crystal structure of multiple sugar binding transport atp-2 binding protein
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
Predicted Secondary structure 













































Query SS confidence 















































































Query Sequence  MINVQNVSKTFILHQQNGVRLPVLNRASLTVNAGECVVLHGHSGSGKSTLLRSLYANYLPDEGQIQIKHGDEWVDLVTAP
Query Conservation 

 
 


  
            
  

  
  

   
 
 









 
 
      
 
               
Alig confidence 












.......
















































....






Template Conservation   
    
   
  .......   
  


 
  

   
 
 








  
 
      
 
   
....       
Template Sequence  EVKLINIWKRFGD. . . . . . . VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIED. . . . NLVADPE
Template Known Secondary structure  STT.......
TT

STTSSTSS

STT....GG
Template Predicted Secondary structure 

.......





















....




Template SS confidence 















































































   6...10........ .20.........30.........40.........50.........60....... ..70....
 
   81........90.........100.........110.........120.........130.........140.........150.........160
Predicted Secondary structure 

















































Query SS confidence 















































































Query Sequence  ARKVVEIRKTTVGWVSQFLRVIPRISALEVVMQPLLDTGVPREACAAKAARLLTRLNVPERLWHLAPSTFSGGEQQRVNI
Query Conservation             
    
        

 
                       
    
           

 

 

  
Alig confidence 

























































.




















Template Conservation             
             

                         
    
.          




 


 
Template Sequence  KGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGL. TELLNRKPRELSGGQRQRVAL
Template Known Secondary structure  GT

T


S



TTS
TTT

TT
.GGGTT

GGGS
Template Predicted Secondary structure 










































.









Template SS confidence 















































































   75....80.........90.........100.........110.........120.........130.. .......140.........150...
 
   161........170.........180.........190..... ....200.........210.........220.....
Predicted Secondary structure 









.










Query SS confidence 


































.





























Query Sequence  ARGFIVDYPILLLDEPTASLDAKNSAAVVELIREA. KTRGAAIVGIFHDEAVRNDVADRLHPMGAS
Query Conservation 
 

   
 







 


      
   
   .   
 


 


         


 

  
Alig confidence 


































.





























Template Conservation 
 

   
 







  

          
         


 


         


 

  
Template Sequence  GRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKG
Template Known Secondary structure  SS

SSTTTT

T
S

STT
Template Predicted Secondary structure 





















Template SS confidence 

































































   154.....160.........170.........180.........190.........200.........210.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions