Job Description P16679 Confidence 96.75% Date Thu Jan 5 11:35:24 GMT 2012 Rank 122 Aligned Residues 107 % Identity 23% Template c1xx6B_ PDB info PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: x-ray structure of clostridium acetobutylicum thymidine kinase with2 adp. northeast structural genomics target car26. Resolution 2.00 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		N	A	G	E	C	V	V	L	H	G	H	S	G	S	G	K	S	T	.	L	L	R	S	L	Y	A	N	Y	L	P	D	E	G	Q	I	Q	I	K	H	G	D	E	W	V	D	L	V	T	A	P	A	R	K	V	V	E	I	R	K	T	T	V	G	W	V	S	Q	F	L	R	V	I	P	R	I	S	A	L	E	V
Query Conservation																				.
Alig confidence																				.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	H	G	W	V	E	V	I	V	G	P	X	Y	S	G	K	S	E	E	L	I	R	R	I	R	R	A	K	I	A	K	Q	K	I	Q	V	F	K	P	E	A	V	A	I	K	N	S	R	E	I	L	K	Y	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T										S	T	T	S	S															T	T														S	S	S	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	Q	P	L	L	D	T	G	V	P	R	E	A	C	A	A	K	A	A	R	L	L	T	R	L	N	V	P	E	R	L	W	H	L	A	P	S	T	F	S	G	G	E	Q	Q	R	V	N	I	A	R	G	F	I	V	D	Y	P	I	L	L	L	D	E	P	T	A	S	L	D	A	K	N	S	A	A	V	V	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.					.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.					.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	T	E	V	I	A	I	D	E	V	.	Q	F	F	D	.	.	.	.	D	E	I	V	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		S						S	G	.	G	G	S		.	.	.	.	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.					.	.	.	.
Template SS confidence
																																																									80	.	.	.	.	.	.	.	.	.	90		.	.	.	.					.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.											.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	R	E	A	K	T	R	G	A	A	I	V	G	I	F	H	D	.	.	.	.	.	.	.	.	.	.	E	A	V	R	N	D	V	A	D	R	L	H	P	M	G
Query Conservation																				.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	N	K	I	A	E	S	G	R	R	V	I	C	A	G	L	D	X	D	F	R	G	K	P	F	G	P	I	P	E	L	X	A	I	A	E	F	V	D	K	I	Q
Template Known Secondary structure									T	T									S	B		T	T	S		B		T	T									S
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions