Return to main results Retrieve Phyre Job Id

Job DescriptionP64471
Confidence2.18%DateThu Jan 5 12:08:39 GMT 2012
Rank22Aligned Residues12
% Identity25%Templatec3bwrC_
PDB info PDB header:viral proteinChain: C: PDB Molecule:capsid protein vp1; PDBTitle: sv40 vp1 pentamer in complex with gm1 oligosaccharide
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   45....50......
Predicted Secondary structure 



Query SS confidence 











Query Sequence  RGWIYAGDIWHP
Query Conservation 

 


 




Alig confidence 











Template Conservation   
  



 
 
Template Sequence  KDNAYPVECWVP
Template Known Secondary structure  STTTSBTTT
Template Predicted Secondary structure 






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   199200.........210
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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