Job Description Q06065 Confidence 98.76% Date Thu Jan 5 12:33:23 GMT 2012 Rank 183 Aligned Residues 212 % Identity 17% Template c3u5zM_ PDB info PDB header:dna binding protein/dna Chain: M: PDB Molecule:dna polymerase accessory protein 44; PDBTitle: structure of t4 bacteriophage clamp loader bound to the t4 clamp,2 primer-template dna, and atp analog Resolution 3.50 Å

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		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	W	Q	W	G	H	I	L	T	N	S	P	A	M	M	D	I	C	K	D	T	A	K	I	A	L	S	Q	A	S	V	L	I	S	G	E	S	G	T	G	K	E	L	I	A	R	A	I	H	Y	N	S	R	R	A	K	G	P	F	I	K	V	N	C	A	A	L	P	E	S	L	L	E	S	E	L	F	G	H
Query Conservation
Alig confidence																										.																												.	.	.																							.	.	.
Template Conservation																										.																												.	.	.																							.	.	.
Template Sequence		R	P	S	T	I	D	E	C	I	L	P	A	F	D	K	E	T	F	K	S	I	T	S	K	.	G	K	I	P	H	I	I	L	H	S	P	S	P	G	T	G	K	T	T	V	A	K	A	L	C	H	D	.	.	.	V	N	A	D	M	M	F	V	N	G	S	D	C	K	I	D	F	V	R	G	P	L	.	.	.
Template Known Secondary structure				S	S	T	T	T	S																	.	S	S									S	S	S		S	S												.	.	.	T	T								G	G	G								T			.	.	.
Template Predicted Secondary structure																										.																												.	.	.																							.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	G	A	F	T	G	A	Q	T	L	R	Q	G	L	F	E	R	A	N	E	G	T	L	L	L	D	E	I	G	E	M	P	L	V	L	Q	A	K	L	L	R	I	L	Q	E	R	E	F	E	R	I	G	G	H	Q	T	I	K	V	D	I	R	I	I	A	A	T	N	R	D	L	Q	A	M	V	K	E	G	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	T	N	F	A	S	A	A	S	F	D	G	R	Q	K	V	I	V	I	D	E	F	D	R	S	G	L	A	E	S	Q	R	H	L	R	S	F	M	E	.	.	.	.	.	.	.	.	.	.	A	Y	S	S	N	C	S	I	I	I	T	A	N	N	I	.	.	.	.	.	.	.	D	G
Template Known Secondary structure		.	.	.	.	.	.	.	.						S			T	T										S				G	G	G													.	.	.	.	.	.	.	.	.	.		T	T	T	T								S		G	.	.	.	.	.	.	.	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template SS confidence
										89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.											.	.	.	130	.	.	.	.	.	.	.	.	.	140	.								.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	E	D	L	F	Y	R	L	N	V	I	H	L	I	L	P	P	L	R	D	R	R	E	D	I	S	L	L	A	N	H	F	L	Q	K	F	S	S	E	N	Q	R	D	I	I	D	I	D	P	M	A	M	S	L	L	T	A	W	S	W	P	G	N	I	R	E	L	S	N	V	I	E	R	A	V	V	M	N	S
Query Conservation
Alig confidence																						.	.	.	.
Template Conservation																						.	.	.	.
Template Sequence		I	I	K	P	L	Q	S	R	C	R	V	I	T	F	G	Q	P	T	D	E	.	.	.	.	D	K	I	E	M	M	K	Q	M	I	R	R	L	T	E	I	C	K	H	E	G	I	A	I	A	D	M	K	V	V	A	A	L	V	K	K	N	F	P	D	F	R	K	T	I	G	E	L	D	S	Y	S	S	K	G	V
Template Known Secondary structure		S								S					T	T						.	.	.	.																					T				S		S										T		S												T		T	T	S
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.					.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		378	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	I	I	F	S	E	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	A	G	I	L	S	L
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions