Job Description Q06065 Confidence 97.29% Date Thu Jan 5 12:33:23 GMT 2012 Rank 223 Aligned Residues 190 % Identity 16% Template c3qmzA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:cytoplasmic dynein heavy chain; PDBTitle: crystal structure of the cytoplasmic dynein heavy chain motor domain Resolution 6.00 Å

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		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		T	A	K	I	A	L	S	Q	A	S	V	L	I	S	G	E	S	G	T	G	K	E	L	I	A	R	A	I	H	Y	N	S	R	R	A	K	G	P	F	I	K	V	N	C	A	.	A	L	P	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	Q	T	L	R	Q	G	L	F	E	R	A	N
Query Conservation																																															.
Alig confidence																														.	.	.															.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	D	S	L	H	Q	K	Y	G	G	C	F	F	G	P	A	G	T	G	K	T	E	T	V	K	A	F	.	.	.	G	Q	N	L	G	R	V	V	V	V	F	N	C	D	D	S	F	D	Y	Q	V	L	S	R	L	L	V	G	I	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I
Template Known Secondary structure								T	T	T	T							T	T	S	S									.	.	.	T	S	S											S	S	S	S		S												T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																														.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1782	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.				1810	.	.	.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840																		.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.								.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.																												.
Query SS confidence																			.	.	.	.	.	.	.																												.
Query Sequence		E	G	T	L	L	L	D	E	I	G	E	M	P	L	V	L	Q	.	.	.	.	.	.	.	A	K	L	L	R	I	L	Q	E	R	E	F	E	R	I	G	G	H	Q	T	I	K	V	D	I	R	I	.	I	A	A	T	N	R	D	L	Q	A	M	V	K	E	G	T	F	R	E	D	L	F	Y	R	L	N	V	I
Query Conservation																			.	.	.	.	.	.	.																												.
Alig confidence																			.	.	.	.	.	.	.																												.						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	W	G	C	F	D	E	F	N	R	L	D	E	K	V	L	S	A	V	S	A	N	I	Q	Q	I	Q	N	G	L	Q	V	G	K	S	H	I	T	L	L	E	E	E	T	P	L	S	P	H	T	A	V	F	I	T	L	.	.	.	.	.	.	.	.	.	.	.	L	P	E	N	L	K	K	S	F	R	E	F
Template Known Secondary structure									T	T	T	T	S	S																	T	S	T	T	S	S	S						S	S															.	.	.	.	.	.	.	.	.	.	.							T	T	T
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1842	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.												.	1900	.	.	.	.	.	.	.	.	.	1910
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.											.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.
Query Sequence		H	L	I	L	P	P	L	R	D	R	R	E	D	I	S	L	L	A	N	H	F	L	Q	K	F	S	S	E	N	Q	R	D	I	I	D	I	D	P	M	A	M	S	L	L	T	.	.	.	.	.	.	.	.	.	.	A	W	S	W	P	G	N	I	R	E	L	S	N	V	I	E	R	A	V	V	M	N	S	G	P
Query Conservation																																															.	.	.	.	.	.	.	.	.	.
Alig confidence				.			.	.	.	.	.	.	.																				.	.	.												.	.	.	.	.	.	.	.	.	.						.	.
Template Conservation				.			.	.	.	.	.	.	.																				.	.	.																											.	.
Template Sequence		S	M	.	K	S	.	.	.	.	.	.	.	Q	S	G	T	I	A	E	M	I	L	Q	I	M	G	F	E	D	S	K	.	.	.	S	L	A	S	K	I	V	H	F	L	E	L	L	S	S	K	C	S	S	M	N	H	Y	H	F	G	.	.	L	R	T	L	K	G	V	L	R	N	C	S	P	L	I	S	E	F
Template Known Secondary structure				.			.	.	.	.	.	.	.															T	S	S			.	.	.																			S	S	S						.	.																		S
Template Predicted Secondary structure				.			.	.	.	.	.	.	.																				.	.	.																											.	.
Template SS confidence
		1920	.		.	.								.	.	.	.	.	.	1930	.	.	.	.	.	.	.	.	.	1940	.	.				.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.	.	.	.	.	.	.	.			.	1970	.	.	.	.	.	.	.	.	.	1980	.	.	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	F	S	E	D	L	P	P	Q	I	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	G	E	K	T	V	V	E	S	L	K	R
Template Known Secondary structure		S		S	S
Template Predicted Secondary structure
Template SS confidence
		1988	.	1990	.	.	.	.	.	.	.	.	.	2000

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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