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Job DescriptionQ06065
Confidence99.68%DateThu Jan 5 12:33:23 GMT 2012
Rank118Aligned Residues211
% Identity17%Templatec3pxiB_
PDB info PDB header:protein bindingChain: B: PDB Molecule:negative regulator of genetic competence clpc/mecb; PDBTitle: structure of meca108:clpc
Resolution6.93 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   144.....150.........160........ .170.........180.........190.........200.........210......
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Query Sequence  HILTNSPAMMDICKDTAKIALSQAS. . . . . . . VLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFG
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Template Sequence  RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDM. . . . . . . . . SEYME
Template Known Secondary structure  TS
S
TTT
S
TTS
SS
TTSSS
TT
G.........GGG
S
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   509510.........520.........530.........540.........550.........560.........570.... .....
 
   217..220.........230.........240.........250.........260.........270.........280.........290......
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Query Sequence  HEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEG
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Template Sequence  KHSTSLTEK. . . . . . . VRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTTVDFRNTILIMTSNVGASEKDKVMGELKR
Template Known Secondary structure  S




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GGGS
SB



B
TT
SSSTT

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   580........ .590.........600.........610.........620.........630.........640.........650..
 
   297..300.........310.........320.........330.........340.... .....350..... ....360.........370..
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Query Sequence  TFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIID. . IDPMAMSLLTA. . WSWPGNIRELSNVIERA
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Template Sequence  AFRPEFINRIDEI. IVFHEK. . . . KHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKH
Template Known Secondary structure  S
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   696...700........ .710.... .....720.........730.........740.........750.........760.........770
 
   373..
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Query Sequence  VVM
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Template Conservation 
  
Template Sequence  VED
Template Known Secondary structure  T
Template Predicted Secondary structure 
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   773..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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