 |
Job Description | Q06065 | Confidence | 99.82% | Date | Thu Jan 5 12:33:23 GMT 2012 |
Rank | 50 | Aligned Residues | 120 |
% Identity | 26% | Template | c3lteH_ |
PDB info |
PDB header:transcription | Chain: H: PDB Molecule:response regulator; |
PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri
|
Resolution | 2.00 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | |
. | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . |  |
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
Query Sequence |   |
M | T | A | I | N | R | I | L | I | V | D | D | E | D | N | V | R | R | M | L | S | T | A | F | A | L | Q | G | F | E | T | H | C | A | N | N | G | R | T | A | L | H | L | F | A | D | I | H | P | D | V | V | L | M | D | I | R | M | P | E | M | D | G | I | K | A | L | K | E | M | R | S | . |
H | E | T | R | T | P | V |
Query Conservation |   |
|   |   |
|   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|
|
|
|
|   |
|   |   |
|
|   |   |   |
|   |   |   |
|   |   |
|
|   | . |   |   |   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
Template Sequence |   |
L | K | Q | S | K | R | I | L | V | V | D | D | D | Q | A | M | A | A | A | I | E | R | V | L | K | R | D | H | W | Q | V | E | I | A | H | N | G | F | D | A | G | I | K | L | S | T | F | E | P | A | I | M | T | L | D | L | S | M | P | K | L | D | G | L | D | V | I | R | S | L | R | Q | N | K | V | A | N | Q | P | K |
Template Known Secondary structure |   |
|
| G | G | G |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  | T |
|
| S |  |  |  |  |  | S |
|
| S | S |
|
|  |  |  |  |  |  |  |  |  |  | T | T |
| S | S |
|
|  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
64 | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . |
  |
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | L | M | T | A | Y | A | E | V | E | T | A | V | E | A | L | R | C | G | A | F | D | Y | V | I | K | P | F | D | L | D | E | L | N | L | I | V | Q | R | A | L |
Query Conservation |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |
|
|
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |   |
|
Template Sequence |   |
I | L | V | V | S | G | L | D | K | A | K | L | Q | Q | A | V | T | E | G | A | D | D | Y | L | E | K | P | F | D | N | D | A | L | L | D | R | I | H | D | L | V |
Template Known Secondary structure |   |
 |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  | S | S |
|
|  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
144 | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|