Job Description Q06065 Confidence 98.91% Date Thu Jan 5 12:33:23 GMT 2012 Rank 168 Aligned Residues 199 % Identity 24% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.				.	.	240	.	.
Predicted Secondary structure																																																																										.	.	.
Query SS confidence																																																																										.	.	.
Query Sequence		Q	A	S	V	L	I	S	G	E	S	G	T	G	K	E	L	I	A	R	A	I	H	Y	N	S	R	R	A	K	G	P	F	I	K	V	N	C	A	A	L	P	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	Q	T	L	R	Q	G	L	F	E	R	A	N	.	.	.	E	G	T	L	L
Query Conservation																																																																										.	.	.
Alig confidence																										.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation																										.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	.	.	.	C	Q	A	N	F	I	S	I	K	G	P	E	L	L	T	M	W	F	.	.	.	.	.	.	.	.	.	.	.	.	G	E	S	E	A	N	V	R	E	I	F	D	K	A	R	Q	A	A	P	C	V	L	F
Template Known Secondary structure			S								T	T	S													.	.	.	T	T																T	.	.	.	.	.	.	.	.	.	.	.	.	T	T		T							T	T	T	T	T	T	T		S
Template Predicted Secondary structure																										.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.				.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.													.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.															.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.			.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.
Query Sequence		L	D	E	I	G	E	M	P	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	A	K	L	L	R	I	L	Q	E	R	E	F	E	R	I	G	G	H	Q	T	I	K	V	D	I	R	I	I	A	A	T	N	R	D	L	Q	A	M	V	K	E	G	T	F	R	E	D	L	F	Y	.	.	R	L
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.										.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Sequence		F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	.	.	.	.	.	.	.	.	.	D	G	M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	P	.	.	.	.	.	.	.	D	I	I	D	P	A	I	L	R	P	G	R	L
Template Known Secondary structure			S	S	G	G	G	G					T	T	T	T		S	S			S													.	.	.	.	.	.	.	.	.		S	S		T	T	S	S								S		G	.	.	.	.	.	.	.	G	G			G	G	G	T	S	T	T	T	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template SS confidence
		576	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.										.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.								.	.	.	630	.	.	.	.	.	.	.	.	.
		307		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.									.
Predicted Secondary structure			.																																																																						.	.	.	.	.	.	.	.
Query SS confidence			.																																																																						.	.	.	.	.	.	.	.
Query Sequence		N	.	V	I	H	L	I	L	P	P	L	R	D	R	R	E	D	I	S	L	L	A	N	H	F	L	Q	K	F	S	S	E	N	Q	R	D	I	I	D	I	D	P	M	A	M	S	L	L	T	A	W	S	W	P	G	N	I	R	E	L	S	N	V	I	E	R	A	V	V	M	N	.	.	.	.	.	.	.	.	S
Query Conservation			.																																																																						.	.	.	.	.	.	.	.
Alig confidence			.															.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	Q	L	I	Y	I	P	L	P	D	E	K	S	R	V	A	.	.	.	.	.	.	.	.	.	.	.	.	I	L	K	A	N	L	R	K	S	P	V	A	K	D	V	D	L	E	F	L	A	K	M	T	N	G	F	S	G	A	D	L	T	E	I	C	Q	R	A	C	K	L	A	I	R	E	S	I	E	S	E	I
Template Known Secondary structure												T	T					.	.	.	.	.	.	.	.	.	.	.	.						T	T	T	S		B		S	S							T	T	T		S	S															T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.													.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	I	I	F	S	E	D	L	P	P	Q	I	R	Q	P	V	C	N	A	G	E	V	K	T	A	P	V	G	E	R	N	L	K	E	E	I	K	R	V	E	K
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	P	E	I	R	R	D	H	F	E	E	A	M	R	F	A	R	R	S	V	S	D	N	.	.	.	.	.	.	.	.	.	.	.	.	D	I	R	K	Y	E	M
Template Known Secondary structure					B										T	T				S	S				.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		728	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750													.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions